View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_low_2 (Length: 655)
Name: NF13831_low_2
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 316
Target Start/End: Complemental strand, 37005068 - 37004765
Alignment:
| Q |
13 |
aatatgtccaggtttgatatcagttctggtacccatatgcttgaactttgcttcaaaatgttcatggagaaattctttgcctgcatgaagtttactatat |
112 |
Q |
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| T |
37005068 |
aatatgtccaggtttgatatcagttctggtacccatatgcttgaactttgcttcaaaatgttcatggagaaactctttgcctgcatgaagtttactatat |
37004969 |
T |
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| Q |
113 |
gctttagaactactacatgatcaaaataaatgctaattgttgtgtgatgaatctatttatatcactgtatttctattgtggattaggcctctcaatatta |
212 |
Q |
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| T |
37004968 |
gttttagaactactaattgatcaaaataaatgctaattgttgtgtgatgaatctatttatatcactgtatttctattgtggattaggcctctcaatatta |
37004869 |
T |
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| Q |
213 |
tgaaatattttatgaactgataattaaaattggtcaaaccaagcacgttttcgatattttcatttcttaaaaatgagaaattaaaacaaacattttctaa |
312 |
Q |
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| T |
37004868 |
tgaaatattttatgaactgataattaaaattggtcaaaccaagcacgttttcgatattttcatttcttaaaaatgagaaattaaaacaaacattttctaa |
37004769 |
T |
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| Q |
313 |
ctct |
316 |
Q |
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|||| |
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| T |
37004768 |
ctct |
37004765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 375 - 487
Target Start/End: Complemental strand, 37004706 - 37004594
Alignment:
| Q |
375 |
gaccctagagtttttacgtcaactcatactcaagttgagggattatcatttcttcaattttcctttacttcattattttacgcaaagtcatctcctcccc |
474 |
Q |
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| T |
37004706 |
gaccctagagtttttacgtcaactcatactcaagttgagggattgtcatttcttccattttcctttacttcattattttacgcaaagtcatctcctcccc |
37004607 |
T |
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| Q |
475 |
ttcaaactcgtaa |
487 |
Q |
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| T |
37004606 |
ttcaaactcgtaa |
37004594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 553 - 638
Target Start/End: Complemental strand, 37004528 - 37004442
Alignment:
| Q |
553 |
ttgagaagttgtgaggatgcaaatacaaatgtgtggtagccnnnnnnntc-ttctatcaattgtcatggtcccaaaaatataccaaa |
638 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
37004528 |
ttgagaagttgtgaggatgcaaatacaaatgtgtggtagccaaaaaaatctttctatcaattgtcatggtcccaaaaatataccaaa |
37004442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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