View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_low_20 (Length: 273)
Name: NF13831_low_20
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 30651816 - 30652078
Alignment:
| Q |
1 |
cattggaaggttaaaaccgtcaactaaactaacatcatagtaatgtagaggtgaatgtgaggttccaagtgtcatttcaacaagtgtagctggaggaaca |
100 |
Q |
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| T |
30651816 |
cattggaaggttaaaaccgtcaactaaactaacatcatagtaatgtagaggtgaatgtgaggttccaagtgtcatttcaacaagtgtagctggaggaaca |
30651915 |
T |
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| Q |
101 |
ccaccaattcccttgcatttcaattggcctccgcagtctccggtttgacatgtgccttttccggttgtttcgtggaagaaacagccttgtcttccccaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30651916 |
ccaccaattcccttgcatttcaattggcctccgcagtctccggtttgacatgtgccttttccggttgtttcgtggaagaaacagccttgtcttccccaga |
30652015 |
T |
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| Q |
201 |
ttcttcctgcccagtggttagggagttggagaacaagttcttcgccgcttgggaggtgaaatc |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30652016 |
ttcttcctgcccagtggttagggagttggagaacaagttcttcgccgcttgggaggtgaaatc |
30652078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 22787362 - 22787447
Alignment:
| Q |
14 |
aaaccgtcaactaaactaacatcatagtaatgtagaggtgaatgtgaggttccaagtgtcatttcaacaagtgtagctggaggaac |
99 |
Q |
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| T |
22787362 |
aaaccatcaactaaactcacatcatagaaatgtagtggtgaagatgatgatcctagtgtcatttcaactactgttgctggtggaac |
22787447 |
T |
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