View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_low_23 (Length: 239)
Name: NF13831_low_23
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 53458324 - 53458544
Alignment:
| Q |
1 |
tactatgctagacatggtttgtgactgtgatcaggatacctaaatgaccctgaggcgacaaagagaactatagacaaagaaggatggctacacacaggtg |
100 |
Q |
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| T |
53458324 |
tactatgctagacatggtttgtgactgtgatcaggatacctaaatgaccctgaggcgacaaagagaactatagacaaagaaggatggctacaaacaggtg |
53458423 |
T |
|
| Q |
101 |
acattggtttaattgacgacgacgatgaactcttcattgttgatcgattaaaggaattgattaaatacaaaggataccaagtagctcctgctgagctcga |
200 |
Q |
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| T |
53458424 |
acattggtttaattgacgacgacgacgaactcttcattgttgatcgattaaaggaattgattaaatacaaaggataccaagtagctcctgctgagctcga |
53458523 |
T |
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| Q |
201 |
agcattgttgattgctcatcc |
221 |
Q |
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| T |
53458524 |
agcattgttgattgctcatcc |
53458544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 352062 - 352195
Alignment:
| Q |
70 |
atagacaaagaaggatggctacacacaggtgacattggtttaattgacgacgacgatgaactcttcattgttgatcgattaaaggaattgattaaataca |
169 |
Q |
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| T |
352062 |
atagacaaggaaggttggttgcatactggtgacattggattcattgacgatgatgatgagttgttcatagttgatagacttaaagaattgattaaataca |
352161 |
T |
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| Q |
170 |
aaggataccaagtagctcctgctgagctcgaagc |
203 |
Q |
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| T |
352162 |
aaggttttcaagttgctccagctgaacttgaagc |
352195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 45524551 - 45524702
Alignment:
| Q |
52 |
gaggcgacaaagagaactatagacaaagaaggatggctacacacaggtgacattggtttaattgacgacgacgatgaactcttcattgttgatcgattaa |
151 |
Q |
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| T |
45524551 |
gaggcaacagagagaaccatagacaaagaaggttggttgtatacaggtgatattgggtatattgatgaagatgatgagttattcattgttgatagattga |
45524650 |
T |
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| Q |
152 |
aggaattgattaaatacaaaggataccaagtagctcctgctgagctcgaagc |
203 |
Q |
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| T |
45524651 |
aggaattaatcaaatacaaaggatttcaagttgctccagctgaacttgaagc |
45524702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 23872016 - 23872066
Alignment:
| Q |
133 |
ttcattgttgatcgattaaaggaattgattaaatacaaaggataccaagta |
183 |
Q |
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| T |
23872016 |
ttcattgttgatcgaattaaggaattgatcaaatacaaaggcttccaagta |
23872066 |
T |
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