View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_low_26 (Length: 219)
Name: NF13831_low_26
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_26 |
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| [»] scaffold0883 (1 HSPs) |
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| [»] scaffold0095 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 38817439 - 38817290
Alignment:
| Q |
54 |
agtgatttttctgctgcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcgg |
153 |
Q |
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| T |
38817439 |
agtgatttttctgctgcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctccgcctcctttgttgcctcttcagcttctgccatggcgg |
38817340 |
T |
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| Q |
154 |
cttctgcttcagcaactgcttgagcagcacatgtgattacctcttgtaaa |
203 |
Q |
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| T |
38817339 |
cttctgcttcagcaactgcttgagcagcacatgcgattacctcttgtaaa |
38817290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 39458091 - 39457978
Alignment:
| Q |
69 |
gcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaa |
168 |
Q |
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| T |
39458091 |
gcttctgcaaaagcttctgctgcagctgcatccgcttctgcagcctctgcctccttagctgcctcttcagcttccgctatggcggcttctgcatcagcga |
39457992 |
T |
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| Q |
169 |
ctgcttgagcagca |
182 |
Q |
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| T |
39457991 |
ctgctcgagcagca |
39457978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 15996391 - 15996438
Alignment:
| Q |
89 |
tgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttc |
136 |
Q |
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| T |
15996391 |
tgcatctgcatctgcttctgcagcctcagcctcctctattgcctcttc |
15996438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 39465381 - 39465325
Alignment:
| Q |
117 |
gcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgct |
173 |
Q |
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| T |
39465381 |
gcctcctttgttgcctcttcagcttccgtagtggcggcttccacttcagtaactgct |
39465325 |
T |
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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 89 - 182
Target Start/End: Complemental strand, 12082745 - 12082652
Alignment:
| Q |
89 |
tgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgcttgagcagca |
182 |
Q |
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| T |
12082745 |
tgcatctgcctccgcttctgcagcctctgcctcctttgttgcctcttcagcctccgccatgagggcttccgcttcagcaactgctcgagcagca |
12082652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0883 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0883
Description:
Target: scaffold0883; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 4609 - 4722
Alignment:
| Q |
69 |
gcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaa |
168 |
Q |
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|||| ||||| |||| | |||||| |||| || ||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||| | |
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| T |
4609 |
gcttctgcaaaagcttctgctgcagctgcatccgcttctgcagcctctgcctccttagctgcctcttcagcttccgctatggcggcttctgcatcagcga |
4708 |
T |
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| Q |
169 |
ctgcttgagcagca |
182 |
Q |
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| T |
4709 |
ctgctcgagcagca |
4722 |
T |
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Target: scaffold0095 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 48402 - 48515
Alignment:
| Q |
69 |
gcttttgcaatagctgccgctgcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaa |
168 |
Q |
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| T |
48402 |
gcttctgcaaaagcttctgctgcagctgcatccgcttctgcagcctctgcctccttagctgcctcttcagcttccgctatggcggcttctgcatcagcga |
48501 |
T |
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| Q |
169 |
ctgcttgagcagca |
182 |
Q |
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| T |
48502 |
ctgctcgagcagca |
48515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 23120 - 23176
Alignment:
| Q |
117 |
gcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgct |
173 |
Q |
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| T |
23120 |
gcctcctttgttgcctcttcagcttccgtagtggcggcttccacttcagtaactgct |
23176 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 20150201 - 20150104
Alignment:
| Q |
90 |
gcatctgcttctgcttctgcagcctctgcctcctttgttgcctcttcagcttctgccatggcggcttctgcttcagcaactgcttgagcagcacatgt |
187 |
Q |
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| T |
20150201 |
gcatctgcatccgcttctgcagtcagtacctcctttgttgcctcttcagcttccgcaatggcggcttccgctttagcaacagctccagcagcatatgt |
20150104 |
T |
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