View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13831_low_3 (Length: 635)
Name: NF13831_low_3
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_3 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 601; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Original strand, 47543860 - 47544480
Alignment:
| Q |
1 |
tccttatgaacttggacttcagcctactgtaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaacatttgcatggga |
100 |
Q |
| |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47543860 |
tccttatgaacttggacttcatcctactgcaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaacatttgcatggga |
47543959 |
T |
|
| Q |
101 |
aatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgttgttacagcaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47543960 |
aatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgttgttacagcaatc |
47544059 |
T |
|
| Q |
201 |
aggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataacccttccgatgcaaaacgacttaaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47544060 |
aggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatagagacaataacccttccgatgcaaaacgacttaaga |
47544159 |
T |
|
| Q |
301 |
ggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgtttacttaaattgcttatccaaacatggtc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
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| T |
47544160 |
ggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgtttgcttaaatcgcttatccaaacatggtc |
47544259 |
T |
|
| Q |
401 |
ttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagatagaaagatagctaagaatactgagcttgaaac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544260 |
ttaatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagatagaaagatagctaagaatactgagcttgaaac |
47544359 |
T |
|
| Q |
501 |
acaggtctgcatgcatgctttttaaatccaagtcttatgccttctcttatctgatctctgtatccatcctaattagtctttcaaatcttattaggtctct |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47544360 |
acaggtctgcatgcatgctttttaaatccaagtcttatgccttctcttatctgatctctgtatccatcctaattagtctttcaaatcttattaggtctct |
47544459 |
T |
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| Q |
601 |
acattaagaggtgaaaattct |
621 |
Q |
| |
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||||||||||||||||||||| |
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| T |
47544460 |
acattaagaggtgaaaattct |
47544480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 402 - 588
Target Start/End: Original strand, 47528128 - 47528314
Alignment:
| Q |
402 |
taatgccttatgacattgccttttcaggatgctccaaaatagggaatcagctaaacgatcgagagatagaaagatagctaagaatactgagcttgaaaca |
501 |
Q |
| |
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|||||||| |||||||||||||| |||||||||| |||||||||||||||| ||| || ||| |||||| |||| | ||||||||||||||| |
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| T |
47528128 |
taatgcctaatgacattgccttt-caggatgctctctaatagggaatcagctagacgctcaagacgaagaaagcaagctcatttaactgagcttgaaaca |
47528226 |
T |
|
| Q |
502 |
caggtctgcatgcatg-ctttttaaatccaagtcttatgccttctcttatctgatctctgtatccatcctaattagtctttcaaatct |
588 |
Q |
| |
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|||||| ||||||||| |||||| ||||| |||| ||| || |||| |||||||||| | |||||| ||||||||| ||||||||| |
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| T |
47528227 |
caggtcagcatgcatgtttttttagatccatttcttctgcattttcttctctgatctctatgtccatcttaattagtcgttcaaatct |
47528314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 10281776 - 10281666
Alignment:
| Q |
310 |
attctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgtttacttaaattgcttatccaaacatggtcttaatgcct |
409 |
Q |
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|||||||||||||||| |||||| |||| |||||||||||| | |||| ||| | |||||| |||||||| ||||||||||||| ||||||| || |
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| T |
10281776 |
attctaggagttcaatgtgtttctcataggacatgataaacgcatgtgctat-----tttgtttaattaaattgtttatccaaacatgatcttaatatct |
10281682 |
T |
|
| Q |
410 |
tatgacattgcctttt |
425 |
Q |
| |
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|||||| |||||||| |
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| T |
10281681 |
aatgacactgcctttt |
10281666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 588
Target Start/End: Original strand, 47537849 - 47537902
Alignment:
| Q |
535 |
ttatgccttctcttatctgatctctgtatccatcctaattagtctttcaaatct |
588 |
Q |
| |
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||||||||||| || ||||||||||||||||||| |||||||||||| |||||| |
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| T |
47537849 |
ttatgccttctattctctgatctctgtatccatcttaattagtcttttaaatct |
47537902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 47527660 - 47527761
Alignment:
| Q |
164 |
tccttccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaat |
263 |
Q |
| |
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||||| ||||||| ||||||| | ||||||| |||| |||||| ||||||||||| |||||||| ||| ||| |||| |||||| ||||||||||| |
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| T |
47527660 |
tccttgcatgccaaagaaaccagctgttaca---atcaagtcaacaacaagtggatcatcagacgatgaggaaggtgat---ggagagattaatatgaat |
47527753 |
T |
|
| Q |
264 |
ggagacaa |
271 |
Q |
| |
|
|||||||| |
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| T |
47527754 |
ggagacaa |
47527761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 10266952 - 10266914
Alignment:
| Q |
87 |
acatttgcatgggaaatttataaaagttatccgtctttt |
125 |
Q |
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| T |
10266952 |
acatttgcatgggaaatttataaaagttatccgtatttt |
10266914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 101322 - 101431
Alignment:
| Q |
179 |
gaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataaccct |
278 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||||| |||||| | ||| |||| |||||| ||||||||||||||||||| ||| || |
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| T |
101322 |
gaaacctgttgttacaac---caggtcaacgacaagtggatcctcaggcgaagatgaggcttatcaaggagagattaatatgaatggagacaagaacgct |
101418 |
T |
|
| Q |
279 |
tccgatgcaaaac |
291 |
Q |
| |
|
|| |||||||||| |
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|
| T |
101419 |
tctgatgcaaaac |
101431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 341
Target Start/End: Original strand, 101435 - 101466
Alignment:
| Q |
310 |
attctaggagttcaatatgtttcacatacgac |
341 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
101435 |
attctaggagttcaatatgtttcacatacgac |
101466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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