View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13831_low_4 (Length: 632)

Name: NF13831_low_4
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13831_low_4
NF13831_low_4
[»] chr2 (26 HSPs)
chr2 (251-617)||(6214989-6215359)
chr2 (123-256)||(6214836-6214971)
chr2 (1-64)||(6214716-6214779)
chr2 (507-563)||(24727426-24727482)
chr2 (507-565)||(4138189-4138247)
chr2 (507-565)||(4263868-4263925)
chr2 (507-565)||(29795445-29795503)
chr2 (507-565)||(40700205-40700263)
chr2 (507-564)||(9834085-9834142)
chr2 (507-564)||(15141472-15141529)
chr2 (507-563)||(7121390-7121446)
chr2 (509-565)||(42607536-42607592)
chr2 (507-563)||(45202136-45202192)
chr2 (507-570)||(6885484-6885547)
chr2 (507-538)||(36644083-36644114)
chr2 (507-565)||(9432012-9432070)
chr2 (507-565)||(10711734-10711792)
chr2 (507-564)||(9647143-9647199)
chr2 (507-564)||(14891093-14891150)
chr2 (507-564)||(22353179-22353236)
chr2 (509-538)||(39449122-39449151)
chr2 (509-565)||(6646833-6646889)
chr2 (512-564)||(10550468-10550520)
chr2 (507-563)||(25801817-25801873)
chr2 (507-563)||(27538920-27538976)
chr2 (507-563)||(43725216-43725272)
[»] chr3 (23 HSPs)
chr3 (507-565)||(48117345-48117403)
chr3 (507-564)||(35368621-35368678)
chr3 (509-565)||(23906993-23907049)
chr3 (508-564)||(47683800-47683856)
chr3 (507-565)||(29846895-29846953)
chr3 (507-565)||(43169757-43169815)
chr3 (507-563)||(3484770-3484826)
chr3 (507-563)||(9753167-9753223)
chr3 (507-563)||(23868982-23869038)
chr3 (507-563)||(26548778-26548834)
chr3 (507-563)||(29057659-29057715)
chr3 (507-563)||(30580133-30580189)
chr3 (508-564)||(54007474-54007530)
chr3 (509-564)||(11056928-11056983)
chr3 (510-565)||(44937217-44937272)
chr3 (507-565)||(46952947-46953005)
chr3 (507-565)||(49761317-49761375)
chr3 (507-565)||(50745558-50745616)
chr3 (509-538)||(31376770-31376799)
chr3 (507-560)||(31997816-31997869)
chr3 (507-564)||(48490517-48490574)
chr3 (507-564)||(50876366-50876423)
chr3 (507-563)||(43149347-43149403)
[»] chr8 (20 HSPs)
chr8 (507-568)||(14233648-14233709)
chr8 (507-565)||(38939193-38939251)
chr8 (509-570)||(41776179-41776240)
chr8 (507-565)||(37392132-37392190)
chr8 (511-565)||(40413357-40413411)
chr8 (507-563)||(38174237-38174294)
chr8 (507-564)||(45405823-45405880)
chr8 (512-560)||(11138910-11138958)
chr8 (507-565)||(13924020-13924078)
chr8 (507-565)||(14710897-14710955)
chr8 (507-565)||(29107993-29108051)
chr8 (507-565)||(30439509-30439567)
chr8 (507-564)||(5502370-5502427)
chr8 (507-564)||(7586165-7586222)
chr8 (509-538)||(29991449-29991478)
chr8 (507-567)||(157063-157123)
chr8 (507-563)||(1370289-1370345)
chr8 (507-563)||(6243045-6243101)
chr8 (507-563)||(6968236-6968292)
chr8 (507-563)||(23265358-23265414)
[»] chr4 (40 HSPs)
chr4 (507-564)||(2109442-2109499)
chr4 (507-562)||(28676156-28676211)
chr4 (507-565)||(33093119-33093177)
chr4 (509-560)||(29974333-29974384)
chr4 (507-566)||(31413790-31413849)
chr4 (507-565)||(46686243-46686300)
chr4 (507-563)||(4974111-4974167)
chr4 (507-563)||(15515795-15515851)
chr4 (509-565)||(37022270-37022326)
chr4 (507-563)||(37731926-37731982)
chr4 (507-563)||(39241305-39241361)
chr4 (508-563)||(24310526-24310581)
chr4 (507-562)||(52846230-52846285)
chr4 (507-565)||(1868897-1868955)
chr4 (507-565)||(4511823-4511881)
chr4 (507-565)||(28480542-28480600)
chr4 (507-565)||(28481416-28481474)
chr4 (507-565)||(28482291-28482349)
chr4 (507-565)||(28657444-28657502)
chr4 (509-563)||(32365673-32365727)
chr4 (519-565)||(41262645-41262691)
chr4 (507-565)||(43769721-43769779)
chr4 (509-563)||(45764405-45764459)
chr4 (507-565)||(46173548-46173606)
chr4 (507-565)||(54036533-54036591)
chr4 (527-572)||(6290453-6290498)
chr4 (507-564)||(9827987-9828044)
chr4 (507-564)||(27384186-27384243)
chr4 (507-564)||(30973596-30973653)
chr4 (507-564)||(31657657-31657714)
chr4 (507-560)||(40983160-40983213)
chr4 (507-564)||(42490919-42490976)
chr4 (517-565)||(14593292-14593340)
chr4 (507-535)||(22893907-22893935)
chr4 (507-535)||(22945575-22945603)
chr4 (507-563)||(28899219-28899275)
chr4 (507-563)||(30778268-30778324)
chr4 (508-564)||(32621637-32621693)
chr4 (507-563)||(39312619-39312675)
chr4 (399-490)||(47288166-47288260)
[»] chr1 (33 HSPs)
chr1 (507-564)||(43757598-43757655)
chr1 (507-563)||(34187275-34187331)
chr1 (507-566)||(46903478-46903537)
chr1 (507-565)||(40596058-40596116)
chr1 (507-564)||(19427520-19427577)
chr1 (507-563)||(16252763-16252819)
chr1 (507-563)||(41507198-41507254)
chr1 (507-565)||(21446222-21446280)
chr1 (507-565)||(27687523-27687581)
chr1 (507-565)||(49453489-49453547)
chr1 (509-570)||(50797784-50797845)
chr1 (507-563)||(40139126-40139182)
chr1 (507-566)||(45272164-45272223)
chr1 (507-565)||(8200085-8200143)
chr1 (507-565)||(11121490-11121548)
chr1 (507-565)||(30414873-30414931)
chr1 (507-565)||(33358162-33358220)
chr1 (507-565)||(37741956-37742014)
chr1 (507-565)||(42539416-42539474)
chr1 (507-565)||(48325782-48325840)
chr1 (507-569)||(49589978-49590040)
chr1 (507-560)||(5477167-5477220)
chr1 (522-563)||(34974779-34974820)
chr1 (509-538)||(37588680-37588709)
chr1 (509-538)||(44789148-44789177)
chr1 (509-538)||(47820506-47820535)
chr1 (512-565)||(48103398-48103450)
chr1 (507-564)||(48220147-48220204)
chr1 (526-566)||(740990-741030)
chr1 (507-563)||(16836119-16836175)
chr1 (526-562)||(18959005-18959041)
chr1 (507-563)||(29293959-29294015)
chr1 (507-563)||(32319312-32319368)
[»] chr6 (12 HSPs)
chr6 (507-563)||(9395341-9395397)
chr6 (507-563)||(12177577-12177633)
chr6 (509-565)||(12441536-12441592)
chr6 (507-563)||(32644623-32644679)
chr6 (507-563)||(16121163-16121219)
chr6 (507-563)||(33527435-33527491)
chr6 (507-565)||(5028269-5028327)
chr6 (526-571)||(12044324-12044369)
chr6 (507-565)||(30945821-30945881)
chr6 (509-538)||(33421797-33421826)
chr6 (507-535)||(30796079-30796107)
chr6 (507-563)||(32135435-32135491)
[»] chr5 (19 HSPs)
chr5 (507-560)||(41865623-41865676)
chr5 (507-565)||(14206398-14206456)
chr5 (515-564)||(14508180-14508229)
chr5 (509-565)||(372726-372782)
chr5 (507-563)||(16202731-16202787)
chr5 (507-559)||(29227721-29227773)
chr5 (507-566)||(3640200-3640259)
chr5 (509-564)||(6865793-6865848)
chr5 (507-565)||(38919861-38919917)
chr5 (507-565)||(12203156-12203214)
chr5 (507-565)||(13734364-13734422)
chr5 (507-565)||(33567227-33567285)
chr5 (507-564)||(8725426-8725483)
chr5 (399-440)||(18395239-18395280)
chr5 (507-564)||(43153064-43153121)
chr5 (507-563)||(8442170-8442226)
chr5 (507-563)||(30334770-30334826)
chr5 (507-567)||(33910092-33910152)
chr5 (507-563)||(41210517-41210573)
[»] scaffold0054 (1 HSPs)
scaffold0054 (507-565)||(31604-31662)
[»] chr7 (29 HSPs)
chr7 (507-565)||(3937125-3937183)
chr7 (507-565)||(22330635-22330693)
chr7 (507-565)||(37351994-37352052)
chr7 (507-565)||(43942647-43942704)
chr7 (508-565)||(2469701-2469758)
chr7 (507-560)||(23680042-23680095)
chr7 (509-562)||(24044753-24044806)
chr7 (509-565)||(2323302-2323358)
chr7 (509-565)||(26041319-26041375)
chr7 (514-562)||(46725618-46725666)
chr7 (509-564)||(33224834-33224889)
chr7 (507-570)||(34992339-34992402)
chr7 (508-563)||(37832450-37832505)
chr7 (507-562)||(38547294-38547349)
chr7 (507-570)||(41989746-41989808)
chr7 (507-565)||(5905969-5906027)
chr7 (507-565)||(6822537-6822595)
chr7 (509-563)||(8742394-8742448)
chr7 (507-565)||(11352977-11353035)
chr7 (507-565)||(21589931-21589989)
chr7 (507-565)||(30391157-30391215)
chr7 (507-565)||(37856169-37856227)
chr7 (507-565)||(40108133-40108191)
chr7 (507-565)||(41985104-41985162)
chr7 (507-564)||(24380725-24380782)
chr7 (507-564)||(45420064-45420121)
chr7 (507-564)||(47078254-47078311)
chr7 (507-563)||(27866541-27866597)
chr7 (507-563)||(33465043-33465099)
[»] scaffold0005 (1 HSPs)
scaffold0005 (517-565)||(224038-224086)


Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 251 - 617
Target Start/End: Original strand, 6214989 - 6215359
Alignment:
Q  251 tacaaaatatagagaaatatatttgtgcaactaaattttgaaaagttgtgtatatttgtattatgtttttactttctctttcgctttagtttgtgtgatt 350  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6214989 tacaaaatatagagaaatatatttatgcaactaatttttgaaaagttgtgtatattcgtattatgtttttactttctctttcgctttagtttgtgtgatt 6215088  T
Q  351 gtctcataagttgttatattcaaataacacaactcattttttaaagtttgttatttgaacaaccagttgggagataattgttgggaca---ataaattga 447  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||   |||||||||    
T  6215089 gtctcataagttgttatattcgaataacacaactcattttttaaagtgtgttatttgaacaaccagttgggagacaattgttgggacaaccataaattga 6215188  T
Q  448 caaacaaaagtagctttcgacactgaaactaaagcaatagagaaagaaaatnnnnnnnntaatgtgagtatgaaagagaaagttgtaacaagatagttgt 547  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| |||||||||| ||||||||    
T  6215189 caaacaaaagtagctttcgacactgaaactaaagcaatagagaaagaaaataaaaaaaataatgtgagtatgaaagagaaggttgtaacaaaatagttgt 6215288  T
Q  548 ataaatatcatttctctt-gaaaagaaactattcaaagaacaatatatgagttaaaagttcccaatttact 617  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6215289 ataaatatcatttctcttaaaaaagaaactattcaaagaacaatatatgagttaaaagttcccaatttact 6215359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 123 - 256
Target Start/End: Original strand, 6214836 - 6214971
Alignment:
Q  123 gggttgcgaattgcgatatgt-----ctgtgtggtgttattgaatgctnnnnnnnnnnntaaaggaaaagaaatacgggtcaaattttcatgaagttgga 217  Q
    |||||||||||||||||||||     ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||    
T  6214836 gggttgcgaattgcgatatgtatcttctgtgtggtgttattgaatgctaaaaaaaa---taaaggaaaagaaatacgggtcaaattttcatgaagttgga 6214932  T
Q  218 taacaaaaatattaaaatatcgggaggagggggtacaaa 256  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6214933 taacaaaaatattaaaatatcgggaggagggggtacaaa 6214971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 6214716 - 6214779
Alignment:
Q  1 attgttcatgtaatttgcacattttaaaaacgtaattgacattgcaattaactttattcctggt 64  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6214716 attgttcatgtattttgcacattttaaaaacgtaattcacattgcaattaactttattcctggt 6214779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 24727482 - 24727426
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||||||||||||| ||| || |||||| ||||||||||||||    
T  24727482 taatgtgagtatgagagagaaagttgtaccaaaatggttgtacaaatatcatttctc 24727426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 4138189 - 4138247
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| | || |||||| || ||||||||||||||||    
T  4138189 taatgtgagtatgagagagaaagttgttagaaaatagttatacaaatatcatttctctt 4138247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 4263868 - 4263925
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||||||||||||||||||||| | || || |||||| ||||||||||||||||    
T  4263868 taatgtgagtatgaaagagaaagttgtcaaaaaat-gttgtacaaatatcatttctctt 4263925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 29795503 - 29795445
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||  |||||||||||| |||| || |||||| ||||||||||||||||    
T  29795503 taatgtgagtatgtgagagaaagttgtcacaaaatggttgtacaaatatcatttctctt 29795445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 40700263 - 40700205
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| | || ||||||||| ||||| ||||||||||    
T  40700263 taatgtgagtatgagagagaaagttgttataaaatagttgtacaaataccatttctctt 40700205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 9834085 - 9834142
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||| ||||||||||||||| |||||| | || || ||||||||||||||||||||||    
T  9834085 taatatgagtatgaaagagatagttgtcataaaatggttgtataaatatcatttctct 9834142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 15141529 - 15141472
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||| | || |||| |||| |||||||||||||||    
T  15141529 taatgtgagtatgagagagaaagttgtcataaaatagatgtacaaatatcatttctct 15141472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 7121446 - 7121390
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| |||| || ||| || ||||||||||||||    
T  7121446 taatgtgagtatgagagagaaagttgttacaaaatggttatacaaatatcatttctc 7121390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 565
Target Start/End: Original strand, 42607536 - 42607592
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| ||||||| |||| |||| ||| ||||| ||||||||||||||||    
T  42607536 atgtgagtatgagagagaaaattgtcacaaaataattgtacaaatatcatttctctt 42607592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 45202136 - 45202192
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||| ||||| |||||||||||||| || || |||||| ||||||||||||||    
T  45202136 taatgtgaatatgagagagaaagttgtaaaaaaatggttgtacaaatatcatttctc 45202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 570
Target Start/End: Original strand, 6885484 - 6885547
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttgaaaa 570  Q
    |||||||||||||| ||||||| |||||  || ||||||||| ||| |||||||||||| ||||    
T  6885484 taatgtgagtatgagagagaaaattgtataaaaatagttgtacaaaaatcatttctcttaaaaa 6885547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 538
Target Start/End: Original strand, 36644083 - 36644114
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||||    
T  36644083 taatgtgagtatgaaagagaaagttgtaacaa 36644114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 9432070 - 9432012
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||| ||||||||||||||||| ||||| ||| || |||||| |||| |||||||||||    
T  9432070 taatatgagtatgaaagagaaaattgtatcaaaatggttgtacaaatttcatttctctt 9432012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 10711792 - 10711734
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| ||||||| |||| |||| |||| |||  ||||||||||||||||    
T  10711792 taatgtgagtatgagagagaaaattgtcacaaaatagatgttcaaatatcatttctctt 10711734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 9647199 - 9647143
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||| ||||||||| |||||||||||||| || ||||||||  |||||||||||||||    
T  9647199 taatatgagtatgagagagaaagttgtaa-aaaatagttgttcaaatatcatttctct 9647143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 14891093 - 14891150
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||| ||||| | |||||||| | |||| ||||||||| |||||||||||||||    
T  14891093 taatgtgaatatgagaaagaaagttatcacaaaatagttgtacaaatatcatttctct 14891150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 22353179 - 22353236
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| | |||||||||| |||| ||  ||||| |||||||||||||||    
T  22353179 taatgtgagtatgagaaagaaagttgtcacaaaatgattgtacaaatatcatttctct 22353236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Original strand, 39449122 - 39449151
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||    
T  39449122 atgtgagtatgaaagagaaagttgtaacaa 39449151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 565
Target Start/End: Complemental strand, 6646889 - 6646833
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  6646889 atgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctt 6646833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 512 - 564
Target Start/End: Original strand, 10550468 - 10550520
Alignment:
Q  512 tgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    ||||||||| |||||||||||| | || ||||||||| | |||||||||||||    
T  10550468 tgagtatgagagagaaagttgtgaaaaaatagttgtacatatatcatttctct 10550520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 25801817 - 25801873
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||| |||||||| ||||  | |||||| ||||||||||||||    
T  25801817 taatgtgagtatgagagataaagttgtcacaaattggttgtacaaatatcatttctc 25801873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 27538920 - 27538976
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||| | |||||||||||||  || || |||||| ||||||||||||||    
T  27538920 taatgtgagtatcatagagaaagttgtacaaaaatggttgtacaaatatcatttctc 27538976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 43725272 - 43725216
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| | ||  ||| |||| ||||||||||||||    
T  43725272 taatgtgagtatgagagagaaagttgtcataaagtagatgtacaaatatcatttctc 43725216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 48117403 - 48117345
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||||||||||||||||||||||  || || |||||||||||||||||||||||    
T  48117403 taatgtgagtatgaaagagaaagttgtacaaaaatggttgtataaatatcatttctctt 48117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 35368678 - 35368621
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||||  || ||||||||| |||||||||||||||    
T  35368678 taatgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctct 35368621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 565
Target Start/End: Original strand, 23906993 - 23907049
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| ||||||||||||||||  || |||||| ||||||||||||||||    
T  23906993 atgtgagtatgagagagaaagttgtaacataatggttgtacaaatatcatttctctt 23907049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 564
Target Start/End: Complemental strand, 47683856 - 47683800
Alignment:
Q  508 aatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    ||||||||||||| |||||||||||| |||| || |||||| |||||||||||||||    
T  47683856 aatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctct 47683800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 29846895 - 29846953
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||||  || || |||||| ||||||||||||||||    
T  29846895 taatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctctt 29846953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 43169757 - 43169815
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| ||| |||||||| |||| || |||||| ||||||||||||||||    
T  43169757 taatgtgagtatgagagaaaaagttgtcacaaaatggttgtacaaatatcatttctctt 43169815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 3484826 - 3484770
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||||| || || |||| | ||||||||||||||    
T  3484826 taatgtgagtatgagagagaaagttgtaataaaatggttggacaaatatcatttctc 3484770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 9753223 - 9753167
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||| |||||||||||||||||| | || ||| ||||| ||||||||||||||    
T  9753223 taatgtgaatatgaaagagaaagttgtcaaaatataattgtacaaatatcatttctc 9753167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 23868982 - 23869038
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||||||||||| |||| | || || |||||| ||||||||||||||    
T  23868982 taatgtgagtatgaaagagaaaattgttataaaatggttgtacaaatatcatttctc 23869038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 26548778 - 26548834
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||||||||||||| ||| ||||||||  |||||| |||||||    
T  26548778 taatgtgagtatgagagagaaagttgtaccaaaatagttgtccaaatattatttctc 26548834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 29057715 - 29057659
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||||  || || |||||| ||||||||||||||    
T  29057715 taatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 29057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 30580189 - 30580133
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||| ||||||||||||| |||||||| | || || |||||||||||||||||||||    
T  30580189 taatatgagtatgaaagataaagttgtcataaaatggttgtataaatatcatttctc 30580133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 564
Target Start/End: Complemental strand, 54007530 - 54007474
Alignment:
Q  508 aatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    ||||||||||||| ||||||| |||  |||| ||||||||| |||||||||||||||    
T  54007530 aatgtgagtatgagagagaaaattgctacaaaatagttgtagaaatatcatttctct 54007474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 564
Target Start/End: Original strand, 11056928 - 11056983
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||| |||||||||||||||||| | || || |||||| |||||||||||||||    
T  11056928 atgtgaatatgaaagagaaagttgtcaaaaaattgttgtacaaatatcatttctct 11056983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 565
Target Start/End: Complemental strand, 44937272 - 44937217
Alignment:
Q  510 tgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||| |||||||||||||| | || || |||||| ||||||||||||||||    
T  44937272 tgtgagtataaaagagaaagttgtcaaaaaattgttgtacaaatatcatttctctt 44937217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 46953005 - 46952947
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||| | | || || |||||| ||||||||||||||||    
T  46953005 taatgtgagtatgagagagaaagttatcaaaaaatggttgtacaaatatcatttctctt 46952947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 49761375 - 49761317
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  49761375 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctt 49761317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 50745616 - 50745558
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||||  || ||  ||||| ||||||||||||||||    
T  50745616 taatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctctt 50745558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Original strand, 31376770 - 31376799
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||    
T  31376770 atgtgagtatgaaagagaaagttgtaacaa 31376799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 31997869 - 31997816
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcattt 560  Q
    |||||||||||||||| |||||||||| ||||  | |||||| |||||||||||    
T  31997869 taatgtgagtatgaaaaagaaagttgtcacaaagtggttgtacaaatatcattt 31997816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 48490517 - 48490574
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||||  ||  | |||||| |||||||||||||||    
T  48490517 taatgtgagtatgagagagaaagttgtacaaaagtggttgtacaaatatcatttctct 48490574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 50876366 - 50876423
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||| ||||||||| |||||||||||| | || || |||||| |||||||||||||||    
T  50876366 taatatgagtatgatagagaaagttgtcaaaaaattgttgtacaaatatcatttctct 50876423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 43149347 - 43149403
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| | |||||||||||  || ||||||||| ||||| ||||||||    
T  43149347 taatgtgagtatgagaaagaaagttgtacaaaaatagttgtacaaataacatttctc 43149403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 568
Target Start/End: Original strand, 14233648 - 14233709
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttgaa 568  Q
    ||||| |||||||| |||||||||||||| || ||||||||| |||||||||||||||||||    
T  14233648 taatgcgagtatgagagagaaagttgtaaaaaaatagttgtacaaatatcatttctcttgaa 14233709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 38939193 - 38939251
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||||  || ||||||||| ||||||||||||||||    
T  38939193 taatgtgagtatgagagagaaagttgtacaaaaatagttgtagaaatatcatttctctt 38939251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 570
Target Start/End: Complemental strand, 41776240 - 41776179
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttgaaaa 570  Q
    |||||||||||| |||||||||||||  || ||||||||| |||||||||||||| ||||||    
T  41776240 atgtgagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctcgtgaaaa 41776179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 37392132 - 37392190
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| | || || |||||| ||||||||||||||||    
T  37392132 taatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctctt 37392190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 511 - 565
Target Start/End: Original strand, 40413357 - 40413411
Alignment:
Q  511 gtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||| |||||||||||| |||| ||| ||||| ||||||||||||||||    
T  40413357 gtgagtatgagagagaaagttgtcacaaaataattgtacaaatatcatttctctt 40413411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 38174237 - 38174294
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgt-aacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||||||||||||  | |||||||||||| ||||||||||||||    
T  38174237 taatgtgagtatgagagagaaagttgtctaaaagatagttgtacaaatatcatttctc 38174294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 45405823 - 45405880
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| ||| ||||||||| ||| || |||||| |||||||||||||||    
T  45405823 taatgtgagtatgagagaaaaagttgtatcaaaatggttgtacaaatatcatttctct 45405880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 512 - 560
Target Start/End: Complemental strand, 11138958 - 11138910
Alignment:
Q  512 tgagtatgaaagagaaagttgtaacaagatagttgtataaatatcattt 560  Q
    ||||||||| |||||||||||| |||| ||||||||| |||||||||||    
T  11138958 tgagtatgagagagaaagttgtcacaaaatagttgtacaaatatcattt 11138910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 13924078 - 13924020
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||| |||| |||||||||||||  || || |||||| ||||||||||||||||    
T  13924078 taatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctctt 13924020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 14710897 - 14710955
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| ||  ||||| ||||||||||| ||||    
T  14710897 taatgtgagtatgagagagaaagttgtcacaaaatgattgtacaaatatcatttatctt 14710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 29108051 - 29107993
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| |||||||||||||| | || ||  ||||| ||||||||||||||||    
T  29108051 taatgtgagtataaaagagaaagttgttaaaaaatgattgtacaaatatcatttctctt 29107993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 30439509 - 30439567
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  30439509 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctt 30439567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 5502427 - 5502370
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||| ||||| |||||||||||| ||||  | |||||| |||||||||||||||    
T  5502427 taatgtgaatatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 5502370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 7586165 - 7586222
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||||| |||||||||| || | |||| |||  |||||||||||||||    
T  7586165 taatgtgagtatgaaaaagaaagttgtcaccaaatagatgttcaaatatcatttctct 7586222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Complemental strand, 29991478 - 29991449
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||    
T  29991478 atgtgagtatgaaagagaaagttgtaacaa 29991449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 157123 - 157063
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttga 567  Q
    |||||| ||||||| ||||||||||||  ||| || |||||| ||||||||||| ||||||    
T  157123 taatgtaagtatgagagagaaagttgtcgcaaaatggttgtacaaatatcatttatcttga 157063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 1370289 - 1370345
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||  |||||||||||| ||||  | |||||| ||||||||||||||    
T  1370289 taatgtgagtatgtgagagaaagttgttacaaagtggttgtacaaatatcatttctc 1370345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 6243101 - 6243045
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||||  || ||  ||||| ||||||||||||||    
T  6243101 taatgtgagtatgagagagaaagttgtacaaaaatgattgtacaaatatcatttctc 6243045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 6968236 - 6968292
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| || |||| | |||  ||||||||||||||    
T  6968236 taatgtgagtatgagagagaaagttgtcaccagattgatgttcaaatatcatttctc 6968292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 23265358 - 23265414
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||| |||||||||  || |||||| || ||||||||||||||    
T  23265358 taatgtgagtatgagagaaaaagttgtataaaaatagttatacaaatatcatttctc 23265414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 2109499 - 2109442
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    ||||||||||||||||||||||||||| | ||||| |||||| |||||||||||||||    
T  2109499 taatgtgagtatgaaagagaaagttgtcaaaagatggttgtacaaatatcatttctct 2109442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 28676156 - 28676211
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttct 562  Q
    ||||||||||||||||||||||||||| |||| || |||||| |||||||||||||    
T  28676156 taatgtgagtatgaaagagaaagttgtcacaaaatggttgtacaaatatcatttct 28676211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 33093119 - 33093177
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||| ||||| |||||||||| |||| ||||||||| ||||||||||||||||    
T  33093119 taatgtgagtgtgaaaaagaaagttgtcacaaaatagttgtacaaatatcatttctctt 33093177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 509 - 560
Target Start/End: Original strand, 29974333 - 29974384
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcattt 560  Q
    ||||||||||||||||||||||||| |||| ||||||||  |||||||||||    
T  29974333 atgtgagtatgaaagagaaagttgtcacaaaatagttgttcaaatatcattt 29974384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 31413790 - 31413849
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttg 566  Q
    |||||| ||||||| |||||||||||||  || ||||||||| |||||||||||||||||    
T  31413790 taatgtcagtatgagagagaaagttgtacaaaaatagttgtacaaatatcatttctcttg 31413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 46686300 - 46686243
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || |||||| ||||||||||||||||    
T  46686300 taatgtgagtatgagagagaaagttgt-acaaaatggttgtacaaatatcatttctctt 46686243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 4974167 - 4974111
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||| |||||| |||||||||||| | || ||||||||| ||||||||||||||    
T  4974167 taatgtgggtatgagagagaaagttgttaaaaaatagttgtacaaatatcatttctc 4974111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 15515851 - 15515795
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| | || |||||||||  |||||||||||||    
T  15515851 taatgtgagtatgagagagaaagttgtcataaaatagttgtaccaatatcatttctc 15515795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 565
Target Start/End: Complemental strand, 37022326 - 37022270
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| ||| ||||||||| ||| || |||||| ||||||||||||||||    
T  37022326 atgtgagtatgagagataaagttgtatcaaaatggttgtacaaatatcatttctctt 37022270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 37731982 - 37731926
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||||||||||||| ||| ||  ||||| ||||||||||||||    
T  37731982 taatgtgagtatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 37731926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 39241305 - 39241361
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| ||||  | |||||| ||||||||||||||    
T  39241305 taatgtgagtatgagagagaaagttgtcacaaattggttgtacaaatatcatttctc 39241361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 24310526 - 24310581
Alignment:
Q  508 aatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||||||||| |||||||||||||  || || |||||| ||||||||||||||    
T  24310526 aatgtgagtatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctc 24310581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 52846230 - 52846285
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttct 562  Q
    |||||||||||||| |||||||||||| | || |||| ||| ||||||||||||||    
T  52846230 taatgtgagtatgagagagaaagttgtcataaaatagatgtttaaatatcatttct 52846285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 1868897 - 1868955
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| | |||||||||||  || || |||||| ||||||||||||||||    
T  1868897 taatgtgagtatgagatagaaagttgtacaaaaatggttgtacaaatatcatttctctt 1868955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 4511881 - 4511823
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| | || || ||| || ||||||||||||||||    
T  4511881 taatgtgagtatgagagagaaagttgtcataaaatggttatacaaatatcatttctctt 4511823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 28480542 - 28480600
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||| ||||||||| |||||||||||| | ||  | |||||||||||||||||||||||    
T  28480542 taatatgagtatgacagagaaagttgtcataaagtggttgtataaatatcatttctctt 28480600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 28481416 - 28481474
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||| ||||||||| |||||||||||| | ||  | |||||||||||||||||||||||    
T  28481416 taatatgagtatgacagagaaagttgtcataaagtggttgtataaatatcatttctctt 28481474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 28482291 - 28482349
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||| ||||||||| |||||||||||| | ||  | |||||||||||||||||||||||    
T  28482291 taatatgagtatgacagagaaagttgtcataaagtggttgtataaatatcatttctctt 28482349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 28657444 - 28657502
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  28657444 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctt 28657502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 563
Target Start/End: Original strand, 32365673 - 32365727
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||| ||||| |||||||||||| |||| || |||||| ||||||||||||||    
T  32365673 atgtgaatatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 32365727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 519 - 565
Target Start/End: Original strand, 41262645 - 41262691
Alignment:
Q  519 gaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||||||||| |||| ||| ||||| ||||||||||||||||    
T  41262645 gaaagagaaagttgtcacaaaataattgtacaaatatcatttctctt 41262691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 43769779 - 43769721
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  43769779 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctt 43769721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 563
Target Start/End: Original strand, 45764405 - 45764459
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||| || || ||||||||||| | || ||||||||||||||||||||||||    
T  45764405 atgtgagcattaacgagaaagttgtcataaaatagttgtataaatatcatttctc 45764459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 46173606 - 46173548
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||||| || |||||||||||| ||||  | |||||| ||||||||||||||||    
T  46173606 taatgtgagtacgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctt 46173548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 54036533 - 54036591
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||| ||||||||| ||| |||||||| |||| || |||||| ||||||||||||||||    
T  54036533 taatttgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctctt 54036591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 572
Target Start/End: Complemental strand, 6290498 - 6290453
Alignment:
Q  527 aagttgtaacaagatagttgtataaatatcatttctcttgaaaaga 572  Q
    ||||||| |||| ||||||||| |||||||||||||||| ||||||    
T  6290498 aagttgttacaaaatagttgtacaaatatcatttctcttaaaaaga 6290453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 9827987 - 9828044
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||| ||| |||||||||||||  || || |||||| |||||||||||||||    
T  9827987 taatgtgagtgtgagagagaaagttgtactaaaatggttgtacaaatatcatttctct 9828044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 27384243 - 27384186
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||| ||| ||||| |||||||||||||| || || |||||| |||||||||||||||    
T  27384243 taatatgaatatgagagagaaagttgtaataaaatggttgtacaaatatcatttctct 27384186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 30973653 - 30973596
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||||||| |||||||| | ||  | |||||| |||||||||||||||    
T  30973653 taatgtgagtatgaaagaaaaagttgtcataaagtggttgtacaaatatcatttctct 30973596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 31657714 - 31657657
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||| |||| || | |||  |||||||||||||||    
T  31657714 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 31657657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 560
Target Start/End: Complemental strand, 40983213 - 40983160
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcattt 560  Q
    |||||||||||||||||||| ||||||   || ||||||||| |||||||||||    
T  40983213 taatgtgagtatgaaagagagagttgtcctaaaatagttgtacaaatatcattt 40983160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 42490976 - 42490919
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||| | ||  | |||||| |||||||||||||||    
T  42490976 taatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctct 42490919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 565
Target Start/End: Original strand, 14593292 - 14593340
Alignment:
Q  517 atgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||| |||||||||||| | || | ||||||||||||||||||||||||    
T  14593292 atgagagagaaagttgtcaaaataaagttgtataaatatcatttctctt 14593340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 535
Target Start/End: Complemental strand, 22893935 - 22893907
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaa 535  Q
    |||||||||||||||||||||||||||||    
T  22893935 taatgtgagtatgaaagagaaagttgtaa 22893907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 535
Target Start/End: Complemental strand, 22945603 - 22945575
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaa 535  Q
    |||||||||||||||||||||||||||||    
T  22945603 taatgtgagtatgaaagagaaagttgtaa 22945575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 28899219 - 28899275
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||| ||||| ||||||||||||| ||| ||  ||||| ||||||||||||||    
T  28899219 taatgtgaatatgagagagaaagttgtaccaaaatgattgtacaaatatcatttctc 28899275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 30778268 - 30778324
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| ||||  | | |||| ||||||||||||||    
T  30778268 taatgtgagtatgagagagaaagttgtcacaaattggctgtacaaatatcatttctc 30778324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 564
Target Start/End: Complemental strand, 32621693 - 32621637
Alignment:
Q  508 aatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    ||||||||||| | |||||||||||| |||| || |||||  |||||||||||||||    
T  32621693 aatgtgagtattagagagaaagttgtcacaaaatggttgtgcaaatatcatttctct 32621637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 39312619 - 39312675
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| || | |||| |||  ||||||||||||||    
T  39312619 taatgtgagtatgagagagaaagttgtcactaaatagatgttcaaatatcatttctc 39312675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 490
Target Start/End: Complemental strand, 47288260 - 47288166
Alignment:
Q  399 tgttatttgaacaaccagttgggagataattgttgggaca---ataaattgacaaacaaaagtagctttcgacactgaaactaaagcaatagaga 490  Q
    ||||||||||| ||||| ||| | ||||||| |||| |||   ||||||| ||||| |||||||| | ||||||| ||||| ||| |||||||||    
T  47288260 tgttatttgaataaccatttgtgtgataatttttggaacaaccataaatttacaaagaaaagtaggtatcgacacggaaaccaaaacaatagaga 47288166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 43757655 - 43757598
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||    
T  43757655 taatgtgagtatgaaagagaaagttgtatcaaaatggttgtacaaatatcatttctct 43757598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 34187331 - 34187275
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||    
T  34187331 taatatgagtatgaaagagaaagtggtcacaagatagttgtacaaatatcatttctc 34187275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 566
Target Start/End: Complemental strand, 46903537 - 46903478
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttg 566  Q
    |||||||||||||| ||||||||||||| ||| || |||||| |||||||||||||||||    
T  46903537 taatgtgagtatgagagagaaagttgtatcaaaatggttgtacaaatatcatttctcttg 46903478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 40596058 - 40596116
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || |||||| ||||||||||||||||    
T  40596058 taatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctctt 40596116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 564
Target Start/End: Complemental strand, 19427577 - 19427520
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||  ||||||||||||| ||| || ||||||||||||||||||||||    
T  19427577 taatgtgagtatgtgagagaaagttgtaccaaaatggttgtataaatatcatttctct 19427520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 16252763 - 16252819
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||||||||||||||||||||||||  || || |||||| ||||||||||||||    
T  16252763 taatgtgagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctc 16252819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 41507198 - 41507254
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| |||| || |||||| ||||||||||||||    
T  41507198 taatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcatttctc 41507254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 21446222 - 21446280
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||||  || ||  ||||||||||||||||||||||    
T  21446222 taatgtgagtatgagagagaaagttgtactaaaatgattgtataaatatcatttctctt 21446280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 27687523 - 27687581
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| ||| |||||||| |||| || |||||| ||||||||||||||||    
T  27687523 taatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatatcatttctctt 27687581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 49453547 - 49453489
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| ||||  | |||||| ||||||||||||||||    
T  49453547 taatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctt 49453489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 570
Target Start/End: Complemental strand, 50797845 - 50797784
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttgaaaa 570  Q
    |||||||||||| |||||||||||| |||| ||  ||||| |||||||||||||||| ||||    
T  50797845 atgtgagtatgagagagaaagttgtcacaaaatgattgtacaaatatcatttctctttaaaa 50797784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 40139182 - 40139126
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| | || || |||||| ||||||||||||||    
T  40139182 taatgtgagtatgagagagaaagttgtcataaaatggttgtacaaatatcatttctc 40139126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 45272164 - 45272223
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttg 566  Q
    |||||||||||||| |||||||||||| | ||  | |||||| |||||||||||||||||    
T  45272164 taatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcatttctcttg 45272223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 8200143 - 8200085
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  8200143 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctt 8200085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 11121548 - 11121490
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||||  ||  | |||||| ||||||||||||||||    
T  11121548 taatgtgagtatgagagagaaagttgtacaaaagttgttgtacaaatatcatttctctt 11121490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 30414931 - 30414873
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||| ||||||  || || |||||| ||||||||||||||||    
T  30414931 taatgtgagtatgagagagaaggttgtacaaaaatggttgtacaaatatcatttctctt 30414873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 33358162 - 33358220
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  33358162 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctctt 33358220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 37741956 - 37742014
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||| ||||||||||||||||||||| ||| ||  ||||| ||||||||| ||||||    
T  37741956 taatgtaagtatgaaagagaaagttgtatcaaaatgattgtacaaatatcatctctctt 37742014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 42539474 - 42539416
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||| ||| |||||||||||| |||  || |||||| ||||||||||||||||    
T  42539474 taatgtgagtctgagagagaaagttgtcacataatggttgtacaaatatcatttctctt 42539416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 48325782 - 48325840
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| | ||||| |||| |||| || |||||| ||||||||||||||||    
T  48325782 taatgtgagtatgagatagaaaattgtcacaaaatggttgtacaaatatcatttctctt 48325840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 569
Target Start/End: Original strand, 49589978 - 49590040
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttgaaa 569  Q
    |||||||||||||| | | |||||||||| ||  | |||||| ||||||||||||||||||||    
T  49589978 taatgtgagtatgagataaaaagttgtaataaagtggttgtacaaatatcatttctcttgaaa 49590040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 5477167 - 5477220
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcattt 560  Q
    |||||||||||||| |||||||||||| ||||  | |||||| |||||||||||    
T  5477167 taatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 5477220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 563
Target Start/End: Original strand, 34974779 - 34974820
Alignment:
Q  522 agagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||| |||| || |||||||||||||||||||||    
T  34974779 agagaaagttgtcacaaaatggttgtataaatatcatttctc 34974820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Original strand, 37588680 - 37588709
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||    
T  37588680 atgtgagtatgaaagagaaagttgtaacaa 37588709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Original strand, 44789148 - 44789177
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||    
T  44789148 atgtgagtatgaaagagaaagttgtaacaa 44789177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Original strand, 47820506 - 47820535
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||    
T  47820506 atgtgagtatgaaagagaaagttgtaacaa 47820535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 565
Target Start/End: Original strand, 48103398 - 48103450
Alignment:
Q  512 tgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||| |||||||||||| |||| ||||||||  ||||||||||||||||    
T  48103398 tgagtatgagagagaaagttgtcacaa-atagttgttcaaatatcatttctctt 48103450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 48220147 - 48220204
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||| |||| || | |||  |||||||||||||||    
T  48220147 taatgtgagtatgagagagaaagttgtcacaaaatggatgttcaaatatcatttctct 48220204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 566
Target Start/End: Original strand, 740990 - 741030
Alignment:
Q  526 aaagttgtaacaagatagttgtataaatatcatttctcttg 566  Q
    |||||||| | || |||||||||||||||||||||||||||    
T  740990 aaagttgttagaaaatagttgtataaatatcatttctcttg 741030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 16836119 - 16836175
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||| |||||||| |||| ||  ||||| ||||||||||||||    
T  16836119 taatgtgagtatgagagaaaaagttgtcacaaaatgattgtacaaatatcatttctc 16836175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 526 - 562
Target Start/End: Complemental strand, 18959041 - 18959005
Alignment:
Q  526 aaagttgtaacaagatagttgtataaatatcatttct 562  Q
    ||||||||||||| || ||||||||||||||||||||    
T  18959041 aaagttgtaacaaaatggttgtataaatatcatttct 18959005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 29294015 - 29293959
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||| ||||| |||||||||||| | ||  |||||||| ||||||||||||||    
T  29294015 taatgtgactatgagagagaaagttgtcataaagtagttgtacaaatatcatttctc 29293959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 32319312 - 32319368
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| || | || | ||| |||||||||||||||    
T  32319312 taatgtgagtatgagagagaaagttgtcaccaaatggatgtttaaatatcatttctc 32319368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 9395341 - 9395397
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||||||||||||||||||||||||  || ||||||||| ||||||||||||||    
T  9395341 taatgtgagtatgaaagagaaagttgtacaaaaatagttgtacaaatatcatttctc 9395397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 12177633 - 12177577
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||    
T  12177633 taatgtgagtatgaaagagaaagttgtcacaaaatagttgtacaaataacatttctc 12177577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 565
Target Start/End: Complemental strand, 12441592 - 12441536
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| |||||||||||| ||||  |||||||| ||||||||||||||||    
T  12441592 atgtgagtatgagagagaaagttgtcacaaagtagttgtacaaatatcatttctctt 12441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 32644679 - 32644623
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| | || ||||||||| ||||||||||||||    
T  32644679 taatgtgagtatgagagagaaagttgtcaaaaaatagttgtacaaatatcatttctc 32644623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 16121219 - 16121163
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||| |||||||||||||||||||||  || || |||||| ||||||||||||||    
T  16121219 taatgtaagtatgaaagagaaagttgtacaaaaatggttgtacaaatatcatttctc 16121163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 33527491 - 33527435
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||||| |||| |||||||||| | ||||  |||||||||||||||||||||||    
T  33527491 taatgtgaggatgagagagaaagttatcacaaagtagttgtataaatatcatttctc 33527435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 5028269 - 5028327
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| | |||||||||||| |||| || | ||| |||||||||||||||||    
T  5028269 taatgtgagtataagagagaaagttgtcacaaaatggatgtttaaatatcatttctctt 5028327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 526 - 571
Target Start/End: Complemental strand, 12044369 - 12044324
Alignment:
Q  526 aaagttgtaacaagatagttgtataaatatcatttctcttgaaaag 571  Q
    |||||||| | || |||||||||||||||||||||||||| |||||    
T  12044369 aaagttgtcaaaaaatagttgtataaatatcatttctcttaaaaag 12044324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 30945881 - 30945821
Alignment:
Q  507 taatgtgagtatgaaag--agaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| ||  |||||||||| |||| ||  ||||||||||||||||||||||    
T  30945881 taatgtgagtatgagagggagaaagttgtcacaaaatgattgtataaatatcatttctctt 30945821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Complemental strand, 33421826 - 33421797
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaa 538  Q
    ||||||||||||||||||||||||||||||    
T  33421826 atgtgagtatgaaagagaaagttgtaacaa 33421797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 535
Target Start/End: Original strand, 30796079 - 30796107
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaa 535  Q
    |||||||||||||||||||||||||||||    
T  30796079 taatgtgagtatgaaagagaaagttgtaa 30796107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 32135435 - 32135491
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||||  || ||  ||||| ||||||||||||||    
T  32135435 taatgtgagtatgatagagaaagttgtacaaaaatgattgtacaaatatcatttctc 32135491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 41865623 - 41865676
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcattt 560  Q
    |||||||||||||||||| ||| |||| |||| |||||||||||||||||||||    
T  41865623 taatgtgagtatgaaagataaaattgtcacaaaatagttgtataaatatcattt 41865676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 14206456 - 14206398
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| | || || |||||| ||||||||||||||||    
T  14206456 taatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctctt 14206398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 515 - 564
Target Start/End: Original strand, 14508180 - 14508229
Alignment:
Q  515 gtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||| |||||| |||| ||||||||| |||||||||||||||    
T  14508180 gtatgaaagagatagttgtcacaaaatagttgtacaaatatcatttctct 14508229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 565
Target Start/End: Original strand, 372726 - 372782
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| |||||||||||| |||| || |||||| ||| ||||||||||||    
T  372726 atgtgagtatgagagagaaagttgtcacaaaatggttgtacaaaaatcatttctctt 372782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 16202787 - 16202731
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| |||||||||||| |||| |||| |||| | ||||||||||||    
T  16202787 taatgtgagtatgagagagaaagttgtcacaaaataggtgtacatatatcatttctc 16202731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 507 - 559
Target Start/End: Complemental strand, 29227773 - 29227721
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatt 559  Q
    |||||||||||||| |||||||||||| ||||  |||||||| ||||||||||    
T  29227773 taatgtgagtatgagagagaaagttgtcacaaagtagttgtacaaatatcatt 29227721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 566
Target Start/End: Original strand, 3640200 - 3640259
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttg 566  Q
    |||||||||||||| ||||||||||||  ||| |||| |||  |||||||||||||||||    
T  3640200 taatgtgagtatgagagagaaagttgtctcaaaatagatgttcaaatatcatttctcttg 3640259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 564
Target Start/End: Original strand, 6865793 - 6865848
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||| |||||||||||| ||||  | |||||| |||||||||||||||    
T  6865793 atgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctct 6865848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 38919917 - 38919861
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||||||||  ||||||||||||  || ||||||||| ||||||||||||||||    
T  38919917 taatgtgagtatga--gagaaagttgtacaaaaatagttgtacaaatatcatttctctt 38919861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 12203214 - 12203156
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||| |||| |||||||||||||  || || |||||| ||||||||||||||||    
T  12203214 taatgtgagcatgagagagaaagttgtacaaaaatggttgtacaaatatcatttctctt 12203156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 13734364 - 13734422
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| | ||  | |||||| ||||||||||||||||    
T  13734364 taatgtgagtatgagagagaaagttgtcataaagtggttgtacaaatatcatttctctt 13734422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 33567227 - 33567285
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| ||||  | |||||| ||||||||||| ||||    
T  33567227 taatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttgtctt 33567285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 8725426 - 8725483
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||||| ||  | |||||| |||||| ||||||||    
T  8725426 taatgtgagtatgagagagaaagttgtaataaagtggttgtacaaatataatttctct 8725483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 440
Target Start/End: Complemental strand, 18395280 - 18395239
Alignment:
Q  399 tgttatttgaacaaccagttgggagataattgttgggacaat 440  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||    
T  18395280 tgttatttgaacaaccatttgtgagataatttttgggacaat 18395239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 43153064 - 43153121
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||| ||||| |||||||||||||  || || |||||| |||||||||||||||    
T  43153064 taatgtgaatatgagagagaaagttgtacaaaaattgttgtacaaatatcatttctct 43153121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Complemental strand, 8442226 - 8442170
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||| ||||| |||||||||||||  || ||| ||||| ||||||||||||||    
T  8442226 taatgtgaatatgagagagaaagttgtacaaaaataattgtacaaatatcatttctc 8442170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 30334770 - 30334826
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||||||||||| |||| | ||  | |||||| ||||||||||||||    
T  30334770 taatgtgagtatgaaagagaaaattgtcataaagtggttgtacaaatatcatttctc 30334826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 567
Target Start/End: Original strand, 33910092 - 33910152
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttga 567  Q
    |||||||||||||| |||||||||||| | || || |||| | ||||||||||||| ||||    
T  33910092 taatgtgagtatgagagagaaagttgtcaaaaaatggttgaacaaatatcatttcttttga 33910152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 41210517 - 41210573
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||| | ||| |||||||||||| | || || |||||||||||||||||||||    
T  41210517 taatgtgactctgagagagaaagttgttaaaatatggttgtataaatatcatttctc 41210573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 31604 - 31662
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| | || || |||||| ||||||||||||||||    
T  31604 taatgtgagtatgagagagaaagttgtcaaaaaatggttgtacaaatatcatttctctt 31662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 3937125 - 3937183
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| |||| |||  ||||||||||||||||    
T  3937125 taatgtgagtatgagagagaaagttgtcacaaaatagatgttcaaatatcatttctctt 3937183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 22330635 - 22330693
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| ||||  | |||||| ||||||||||||||||    
T  22330635 taatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctt 22330693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 37351994 - 37352052
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| ||||  | |||||| ||||||||||||||||    
T  37351994 taatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctt 37352052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 43942704 - 43942647
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||||| || ||||||||  ||||||||||||||||    
T  43942704 taatgtgagtatgagagagaaagttgtaa-aaaatagttgttcaaatatcatttctctt 43942647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 508 - 565
Target Start/End: Complemental strand, 2469758 - 2469701
Alignment:
Q  508 aatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||||||| |||||||||||| ||||  | |||||| ||||||||||||||||    
T  2469758 aatgtgagtatgagagagaaagttgtcacaaagtggttgtacaaatatcatttctctt 2469701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 560
Target Start/End: Original strand, 23680042 - 23680095
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcattt 560  Q
    ||||||| |||||||| |||||||||| |||| ||||||||| |||||||||||    
T  23680042 taatgtgtgtatgaaaaagaaagttgtcacaaaatagttgtacaaatatcattt 23680095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 562
Target Start/End: Original strand, 24044753 - 24044806
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttct 562  Q
    |||||||||||||||||| |||||| |||| ||| ||||| |||||||||||||    
T  24044753 atgtgagtatgaaagagagagttgtcacaaaataattgtacaaatatcatttct 24044806  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 565
Target Start/End: Complemental strand, 2323358 - 2323302
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| |||||||||||| | || || |||||| ||||||||||||||||    
T  2323358 atgtgagtatgagagagaaagttgtcataaaattgttgtacaaatatcatttctctt 2323302  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 509 - 565
Target Start/End: Complemental strand, 26041375 - 26041319
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    ||||||||||||||||||||||||| | || || ||||||  |||||||||||||||    
T  26041375 atgtgagtatgaaagagaaagttgtcataaaatggttgtacgaatatcatttctctt 26041319  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 514 - 562
Target Start/End: Complemental strand, 46725666 - 46725618
Alignment:
Q  514 agtatgaaagagaaagttgtaacaagatagttgtataaatatcatttct 562  Q
    ||||||| ||| |||||||| |||| |||||||||||||||||||||||    
T  46725666 agtatgagagaaaaagttgtcacaaaatagttgtataaatatcatttct 46725618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 509 - 564
Target Start/End: Complemental strand, 33224889 - 33224834
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||| |||||||||||| |||| |||| |||  |||||||||||||||    
T  33224889 atgtgagtatgagagagaaagttgtcacaaaatagatgttcaaatatcatttctct 33224834  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 570
Target Start/End: Original strand, 34992339 - 34992402
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttgaaaa 570  Q
    |||||| ||||||||||||| |||||| | || || |||||| |||||||||||||||| ||||    
T  34992339 taatgtaagtatgaaagagagagttgtcataaaatggttgtacaaatatcatttctctttaaaa 34992402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 37832505 - 37832450
Alignment:
Q  508 aatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    ||||||||||||| ||| | |||||| |||| ||||||||| ||||||||||||||    
T  37832505 aatgtgagtatgagagaaagagttgtcacaaaatagttgtacaaatatcatttctc 37832450  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 562
Target Start/End: Original strand, 38547294 - 38547349
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttct 562  Q
    |||||||||||||| | |||||||||| | || ||||||||| |||||||||||||    
T  38547294 taatgtgagtatgagaaagaaagttgtcaaaaaatagttgtacaaatatcatttct 38547349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 570
Target Start/End: Original strand, 41989746 - 41989808
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctcttgaaaa 570  Q
    |||||||||||||| |||||||||||||| || || |||||  |||||||||||||||| ||||    
T  41989746 taatgtgagtatgagagagaaagttgtaa-aaaatggttgttaaaatatcatttctcttaaaaa 41989808  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 5905969 - 5906027
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||| || ||| ||  ||||| ||||||||||||||||    
T  5905969 taatgtgagtatgagagagaaagttataccaaaatgattgtacaaatatcatttctctt 5906027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 6822537 - 6822595
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| ||| |||||||| | || || |||||| ||||||||||||||||    
T  6822537 taatgtgagtatgagagaaaaagttgttagaaaatggttgtacaaatatcatttctctt 6822595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 509 - 563
Target Start/End: Complemental strand, 8742448 - 8742394
Alignment:
Q  509 atgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||| ||| |||||||| | || ||||||||| ||||||||||||||    
T  8742448 atgtgagtatgagagaaaaagttgtcaaaacatagttgtacaaatatcatttctc 8742394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 11352977 - 11353035
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| |||| || | |||  ||||||||||||||||    
T  11352977 taatgtgagtatgagagagaaagttgtcacaaaattgatgttcaaatatcatttctctt 11353035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 21589989 - 21589931
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||||||| |||||||||  || ||| ||||| | ||||||||||||||    
T  21589989 taatgtgagtatgaaagaaaaagttgtacaaaaataattgtacagatatcatttctctt 21589931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 30391215 - 30391157
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||| | ||| |||||||||| || |||||| || ||||||||||||||||    
T  30391215 taatgtgagtataagagaaaaagttgtaataaaatagttatacaaatatcatttctctt 30391157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 37856169 - 37856227
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||  ||| |||||||| |||| || |||||| ||||||||||||||||    
T  37856169 taatgtgagtatgtgagataaagttgtcacaaaatggttgtacaaatatcatttctctt 37856227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Complemental strand, 40108191 - 40108133
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||||  || || |||||| ||| ||||||||||||    
T  40108191 taatgtgagtatgagagagaaagttgtataaaaatggttgtacaaacatcatttctctt 40108133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 565
Target Start/End: Original strand, 41985104 - 41985162
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||||||||||||| |||||||||||| ||||  |  ||||| ||||||||||||||||    
T  41985104 taatgtgagtatgagagagaaagttgtcacaaattgattgtacaaatatcatttctctt 41985162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 24380725 - 24380782
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| | |||||||||||  || || |||||| |||||||||||||||    
T  24380725 taatgtgagtatgagaaagaaagttgtataaaaatggttgtacaaatatcatttctct 24380782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 45420064 - 45420121
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||| ||||| |||||||||||| | || ||||||||  |||||||||||||||    
T  45420064 taatgtgaatatgagagagaaagttgtcaaaaaatagttgttcaaatatcatttctct 45420121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 564
Target Start/End: Original strand, 47078254 - 47078311
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctct 564  Q
    |||||||||||||| |||||||||||| | || |||| |||  |||||||||||||||    
T  47078254 taatgtgagtatgagagagaaagttgtcataaaatagatgttcaaatatcatttctct 47078311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 27866541 - 27866597
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||| |||||||||  || || |||||| ||||||||||||||    
T  27866541 taatgtgagtatgagagataaagttgtacaaaaatggttgtacaaatatcatttctc 27866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 563
Target Start/End: Original strand, 33465043 - 33465099
Alignment:
Q  507 taatgtgagtatgaaagagaaagttgtaacaagatagttgtataaatatcatttctc 563  Q
    |||||||||||||| ||||||| |||||  || || |||||| ||||||||||||||    
T  33465043 taatgtgagtatgagagagaaaattgtacaaaaatggttgtacaaatatcatttctc 33465099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 517 - 565
Target Start/End: Complemental strand, 224086 - 224038
Alignment:
Q  517 atgaaagagaaagttgtaacaagatagttgtataaatatcatttctctt 565  Q
    |||| |||||||||||| | || | ||||||||||||||||||||||||    
T  224086 atgagagagaaagttgtcaaaataaagttgtataaatatcatttctctt 224038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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