View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13831_low_6 (Length: 532)
Name: NF13831_low_6
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_6 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Complemental strand, 47713801 - 47713296
Alignment:
| Q |
16 |
tcatttctttcacaactgaatgataaaagtctagaagctttgtttcaacaaattttagtttagtcaacaaataacttcaaccacggaaaattaattcatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713801 |
tcatttctttcacaactgaatgataaaagtctaaaagctttgtttcaacaaattttagt-----caacaaataacttcaaccacggaaaattaattcatt |
47713707 |
T |
|
| Q |
116 |
gaccgactttcatatccaaagcttcaatcctccatttcttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713706 |
gaccgactttcatatccaaagcttcaatcatccactacttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagc |
47713607 |
T |
|
| Q |
216 |
aagctattattttccttttactcttttctcctttttattatcattatcgtatctcaagcccagggccaaccagattttgtgcgctactcttgtttaaaca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47713606 |
aagctattattttccttttactcttttctcctttttattatcattatcgtatctcaagcccagggccaaccagattttgtgcgctactcttgtataaaca |
47713507 |
T |
|
| Q |
316 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47713506 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaa |
47713407 |
T |
|
| Q |
416 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713406 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
47713307 |
T |
|
| Q |
516 |
gttcttctcac |
526 |
Q |
| |
|
||||||||||| |
|
|
| T |
47713306 |
gttcttctcac |
47713296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 120 - 526
Target Start/End: Complemental strand, 47746285 - 47745879
Alignment:
| Q |
120 |
gactttcatatccaaagcttcaatcctccatttcttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
47746285 |
gactttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatatcacaatgacaattgtatctagcaagc |
47746186 |
T |
|
| Q |
220 |
tattattttccttttactcttttctcctttttattatcattatcgtatctcaagcccagggccaaccagattttgtgcgctactcttgtttaaacaataa |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||| |||| |||||||||| |
|
|
| T |
47746185 |
tattattttccctttactcttttctcctttttattatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataa |
47746086 |
T |
|
| Q |
320 |
tggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47746085 |
tggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctacaatttc |
47745986 |
T |
|
| Q |
420 |
tcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttc |
519 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||| |
|
|
| T |
47745985 |
tcttatggccaaaacactgataaagtaaacgccattggactctgcagaggagatgttaaacccgacctttgccgcagttgtctcaacgattcaagagttc |
47745886 |
T |
|
| Q |
520 |
ttctcac |
526 |
Q |
| |
|
||||||| |
|
|
| T |
47745885 |
ttctcac |
47745879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 120 - 526
Target Start/End: Complemental strand, 47718493 - 47718090
Alignment:
| Q |
120 |
gactttcatatccaaagcttcaatcctccatttcttaataacctgttcttgttccaagacagagatcaatatatcagaatgacaattgtttctagcaagc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
47718493 |
gactttcatatccaaagcttcaatcctccatttcttaattacctgttcttgttccaagacagagatcaatatacacgaatgacaactgtttctagcaagc |
47718394 |
T |
|
| Q |
220 |
tattattttccttttactcttttctcctttttattatcattatcgtatctcaagcccagggccaaccagattttgtgcgctactcttgtttaaacaataa |
319 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||| ||||| ||| |||| |||||||||| |
|
|
| T |
47718393 |
tattattttccttttattctgttct---ttttattatcattatcgtatctcaagcccaaggccaaccaaattttttgcgcaactattgtataaacaataa |
47718297 |
T |
|
| Q |
320 |
tggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
47718296 |
tggcaactacacagccaatagcacctatcaaaacaacctcagcacccttttgtccaatctaacttccaacacagaaatcaactacggtttctacaatttc |
47718197 |
T |
|
| Q |
420 |
tcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttc |
519 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |
|
|
| T |
47718196 |
tcttatggccaaaacactgacaaagtaaacgccgttggcctctgcagaggagatgttaaacctgacgtttgccgaagttgtctcaatgattcaagagttc |
47718097 |
T |
|
| Q |
520 |
ttctcac |
526 |
Q |
| |
|
||||||| |
|
|
| T |
47718096 |
ttctcac |
47718090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 171 - 526
Target Start/End: Complemental strand, 47760561 - 47760211
Alignment:
| Q |
171 |
ttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgtatctc |
270 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| ||||||||||| ||||| ||||| || ||||||| ||||||||| || | |||| || ||||||| |
|
|
| T |
47760561 |
ttccaagacagagagcaatat--cagcatggcaattgtttcttgcaagttattacttaccttttattcttttctctttctcattactttt---gtatctc |
47760467 |
T |
|
| Q |
271 |
aagcccagggccaaccagattttgtgcgctactcttgtttaaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccctttt |
370 |
Q |
| |
|
||||| | | |||||| |||||| || | ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47760466 |
aagccaaagcccaacctgattttctgtacaacttttgtaaaaacgataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccgtttt |
47760367 |
T |
|
| Q |
371 |
atccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagagga |
470 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
47760366 |
gtccaatctaacttccaacgcagaaatcaactacggtttctacaatatttcttatggccaaaacactgacaaagtaaacgccattggactctgtagagga |
47760267 |
T |
|
| Q |
471 |
gatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttctcac |
526 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
47760266 |
gatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcac |
47760211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 324 - 481
Target Start/End: Complemental strand, 6513114 - 6512957
Alignment:
| Q |
324 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
423 |
Q |
| |
|
||||||||| |||| ||||||||||| || ||||| ||||||||| |||||| |||||||||||||| | ||||||||||| ||||| |||| ||||| |
|
|
| T |
6513114 |
aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttctataattcctctt |
6513015 |
T |
|
| Q |
424 |
atggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacc |
481 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |
|
|
| T |
6513014 |
atggaataaacaccgacaaagtaaacgctattggactttgtagaggagatgtcaaacc |
6512957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 319 - 486
Target Start/End: Complemental strand, 6507218 - 6507051
Alignment:
| Q |
319 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
418 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
6507218 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
6507119 |
T |
|
| Q |
419 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
486 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
6507118 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
6507051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 326 - 473
Target Start/End: Complemental strand, 6517511 - 6517364
Alignment:
| Q |
326 |
ctacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttat |
425 |
Q |
| |
|
||||||| |||| |||||||| || | ||||| |||||||||||||||| |||||||||||||| ||||||||||||| ||||| || | ||||||| |
|
|
| T |
6517511 |
ctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttctataactcctcttat |
6517412 |
T |
|
| Q |
426 |
ggccaaaacaccgacaaagtaaacgccattggactctgcagaggagat |
473 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
6517411 |
ggcataaacagcgacaaagtaaacgcaattggactatgcagaggagat |
6517364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 354 - 480
Target Start/End: Original strand, 6521552 - 6521678
Alignment:
| Q |
354 |
aacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgcca |
453 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| | ||||||||||| ||||| |||| ||||||||| | ||||| |||||||||||||| | |
|
|
| T |
6521552 |
aaccttaacacccttttatccactctcacttccaacaaagatatcaactacggtttctataattcctcttatggaaacaacactgacaaagtaaacgcga |
6521651 |
T |
|
| Q |
454 |
ttggactctgcagaggagatgttaaac |
480 |
Q |
| |
|
||||||| || ||||||||||| |||| |
|
|
| T |
6521652 |
ttggactatgtagaggagatgtcaaac |
6521678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 324 - 445
Target Start/End: Complemental strand, 6500384 - 6500263
Alignment:
| Q |
324 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
423 |
Q |
| |
|
||||||||| | |||||||||||| | || ||||||||||| |||||||| | ||||||||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
6500384 |
aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctacaatttttcac |
6500285 |
T |
|
| Q |
424 |
atggccaaaacaccgacaaagt |
445 |
Q |
| |
|
||||| |||||| ||||||||| |
|
|
| T |
6500284 |
atggcgaaaacagcgacaaagt |
6500263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 372 - 478
Target Start/End: Original strand, 6523572 - 6523678
Alignment:
| Q |
372 |
tccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggag |
471 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| |||||||||||||| | || ||||||| ||||||||||||| ||||| || |||||||| | |
|
|
| T |
6523572 |
tccactctcacttccaacacgcaaatcaactacggtttctacaatttctcaaacggtgaaaacacaaacaaagtaaacgcaattggtctttgcagaggcg |
6523671 |
T |
|
| Q |
472 |
atgttaa |
478 |
Q |
| |
|
||||||| |
|
|
| T |
6523672 |
atgttaa |
6523678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 324 - 421
Target Start/End: Original strand, 47777840 - 47777937
Alignment:
| Q |
324 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctc |
421 |
Q |
| |
|
||||||||| | || |||||||| ||| ||||||||||| |||||||||| ||||| ||||||||| |||||||| ||||| |||||||||||||| |
|
|
| T |
47777840 |
aactacacaacaaacagcacctacgaaacaaacctcaacacacttttatccactctcatttccaacacacaaatcaattacggtttctacaatttctc |
47777937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 321 - 428
Target Start/End: Original strand, 47772876 - 47772983
Alignment:
| Q |
321 |
ggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttct |
420 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||| || || ||||| |||| ||| |||| | || ||||||||||||| ||||||||||||| |
|
|
| T |
47772876 |
ggcaactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactacggtttctacaatttct |
47772975 |
T |
|
| Q |
421 |
cttatggc |
428 |
Q |
| |
|
| |||||| |
|
|
| T |
47772976 |
catatggc |
47772983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 319 - 486
Target Start/End: Complemental strand, 1243 - 1076
Alignment:
| Q |
319 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
418 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
1243 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
1144 |
T |
|
| Q |
419 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
486 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
1143 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
1076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 319 - 486
Target Start/End: Complemental strand, 8897 - 8730
Alignment:
| Q |
319 |
atggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaattt |
418 |
Q |
| |
|
|||| ||||||||| |||| |||||||| || | |||||||| |||||| |||||| |||||||||||||| | || |||||||| ||||| |||| |
|
|
| T |
8897 |
atggtaactacacaaccaacagcacctaccacacaaacctcaaaacccttctatccactctcacttccaacaaagatattaactacggtttctataattc |
8798 |
T |
|
| Q |
419 |
ctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatg |
486 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||| || ||||||||||| ||||| |||| |
|
|
| T |
8797 |
ctcttatggcgtaaacaccgacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatg |
8730 |
T |
|
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Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 28862032 - 28861825
Alignment:
| Q |
316 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaa |
415 |
Q |
| |
|
||||||||||||||||| || ||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| |
|
|
| T |
28862032 |
ataatggcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa |
28861933 |
T |
|
| Q |
416 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
515 |
Q |
| |
|
||||| | ||| || ||| | |||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||| |
|
|
| T |
28861932 |
cttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaaga |
28861833 |
T |
|
| Q |
516 |
gttcttct |
523 |
Q |
| |
|
|||||||| |
|
|
| T |
28861832 |
gttcttct |
28861825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 316 - 523
Target Start/End: Complemental strand, 28856755 - 28856548
Alignment:
| Q |
316 |
ataatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaa |
415 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| |
|
|
| T |
28856755 |
ataatagcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaa |
28856656 |
T |
|
| Q |
416 |
tttctcttatggccaaaacaccgacaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaaga |
515 |
Q |
| |
|
||||| | ||| || ||| | |||||||| ||||||| ||| | ||||||||||||||||| || ||| |||||||||| |||| || |||||||| |
|
|
| T |
28856655 |
cttctcattcggcgaagacaacaacaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaaga |
28856556 |
T |
|
| Q |
516 |
gttcttct |
523 |
Q |
| |
|
|||||||| |
|
|
| T |
28856555 |
gttcttct |
28856548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 339 - 523
Target Start/End: Complemental strand, 28831536 - 28831352
Alignment:
| Q |
339 |
agcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctcttatggccaaaacaccg |
438 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||| | ||| ||||||||||| |||||| |||||| |||||||| ||||| || ||| || || | |
|
|
| T |
28831536 |
agcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctacaacttctcatacggcaaaggcaaca |
28831437 |
T |
|
| Q |
439 |
acaaagtaaacgccattggactctgcagaggagatgttaaacctgatgtttgccgcagtcgtctcaatgattcaagagttcttct |
523 |
Q |
| |
|
|||||||| ||||||| ||| | || |||||||||||||| || ||| ||||||| || ||| || |||||||||||||||| |
|
|
| T |
28831436 |
acaaagtatacgccataggattatgtagaggagatgttaatccaaatgattgccgccgttatcttaacaattcaagagttcttct |
28831352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 457
Target Start/End: Complemental strand, 27371881 - 27371748
Alignment:
| Q |
324 |
aactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacgggttctacaatttctctt |
423 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||| || |||||| ||| || | || ||||| |||| |||| |||||||| || ||||||||||| | |
|
|
| T |
27371881 |
aactacacagtcaatagcacctacgacaacaaccttaaaacccttctatacagtttctcttcccacacagaaattaactacggtttttacaatttctcat |
27371782 |
T |
|
| Q |
424 |
atggccaaaacaccgacaaagtaaacgccattgg |
457 |
Q |
| |
|
|||||||| || | |||||| |||| |||||||| |
|
|
| T |
27371781 |
atggccaacacccagacaaaataaaggccattgg |
27371748 |
T |
|
Back To:
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