View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13831_low_9 (Length: 514)
Name: NF13831_low_9
Description: NF13831
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13831_low_9 |
 | |
|
| [»] scaffold0196 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 11632063 - 11631564
Alignment:
| Q |
1 |
cggaagctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatgttgtcgattttttaagaaatgtggaactgaaaatgtt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11632063 |
cggaggctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatgttgtcgattttttaagaaatgcggaactgaaaatgtt |
11631964 |
T |
|
| Q |
101 |
atatgcagtgcaattaagacgaacatataacgtctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11631963 |
atatgcagtgcaattaagacgaacatataacgtctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggat |
11631864 |
T |
|
| Q |
201 |
gttcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11631863 |
attcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattc |
11631764 |
T |
|
| Q |
301 |
aggcaaaagttgcatttgctcgaattgttactttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaagg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11631763 |
aggcaaaagttgcatttgctcgaattgttactttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaagg |
11631664 |
T |
|
| Q |
401 |
atcaatttcaataaaatctgctaacttttcatgggaaggtaatgcatcaaagccaaccctacggaacataaatttagaggttaagcacggccaaaaagtg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11631663 |
atcaatttcaataaaatctgctaacttttcatgggaaggtaatgcatcaaagccaaccctgcggaacataaatttagaggttaagcacggccaaaaagtg |
11631564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 6 - 484
Target Start/End: Complemental strand, 11674079 - 11673601
Alignment:
| Q |
6 |
gctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatgttgtcgattttttaagaaatgtggaactgaaaatgttatatg |
105 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||| | ||| |||||||||||||||| || |||||| || |
|
|
| T |
11674079 |
gctcttgtgaatatgaaagtgttgaagctatatgcatgggaaacccattttaaaaattccatatattacctaagaaatgtggaactcaagttgttatctg |
11673980 |
T |
|
| Q |
106 |
cagtgcaattaagacgaacatataacgtctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggatgttcc |
205 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||||||| ||| ||||||||||||||| | ||||||||||| | |||||||||||| | ||||| |
|
|
| T |
11673979 |
cagtgcaattaagaagaacataccttgtctttcttttttggagctcaccgatgttggtgtcttcggcttcttttctggtctgttacttcttgaaagttcc |
11673880 |
T |
|
| Q |
206 |
tttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattcaggca |
305 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| | |||||||||||||| || |||||| ||||||||||||| ||||||||||| ||||| ||| |
|
|
| T |
11673879 |
tttgcatgcaagtaatgttttcacttttgtggcaacattacgccttgttcaagatcctattacaggtattccagatgttattgcggtgattattcaagca |
11673780 |
T |
|
| Q |
306 |
aaagttgcatttgctcgaattgttactttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaaggatcaa |
405 |
Q |
| |
|
||||||||||||||| | ||||||| ||| || | |||| ||||||||| ||||||||||| |||||| ||||| |||| ||||| ||||| ||| |
|
|
| T |
11673779 |
aaagttgcatttgctaggattgttaattttctccaagcacaagaactgcaaagtgaaaattttaagaaccgatgcttaaatgataaccttaaaggctcag |
11673680 |
T |
|
| Q |
406 |
tttcaataaaatctgctaacttttcatgggaaggtaatgcatcaaagccaaccctacggaacataaatttagaggttaa |
484 |
Q |
| |
|
| | || |||| ||| |||||||||||||| |||||||| ||||||||| ||| | | ||||||||| || ||||| |
|
|
| T |
11673679 |
tctttatcgaatcggctgacttttcatgggaaagtaatgcaataaagccaacactaagaagcataaatttggacgttaa |
11673601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 11618169 - 11618651
Alignment:
| Q |
1 |
cggaagctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatgttgtcgattttttaagaaatgtggaactgaaaatgtt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||| ||| |||||||||||| ||||| || | || |
|
|
| T |
11618169 |
cggaggctcttgtgaatatgaaagtgttgaagctatatgcatgggaaacacattttaaaaatgttgtagataatttaagaaatgtcgaactcaatttttt |
11618268 |
T |
|
| Q |
101 |
atatgcagtgcaattaagacgaacatataacgtctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggat |
200 |
Q |
| |
|
|| | | |||||||||||| ||||||| | | ||| ||||| ||| || | |||||||| ||| || || |||||| | ||||| ||||||||| | |
|
|
| T |
11618269 |
atctccggtgcaattaagaagaacataccatatatttatctttatgacatccctgatgttggcgtcaacagcatctttttttgcatgctacttcttgaag |
11618368 |
T |
|
| Q |
201 |
gttcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattc |
300 |
Q |
| |
|
||||| | ||||||||||||||||||| || || |||||| |||||||||||||||| |||||| ||| || ||||| || ||||| | |||||||| |
|
|
| T |
11618369 |
attcctctgaatgcaagtaatgttttcacattggtcgcaactttgcgccttgttcaagatccaattgcaaacatcccagaagttattgcagcgatcattc |
11618468 |
T |
|
| Q |
301 |
aggcaaaagttgcatttgctcgaattgttactttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaagg |
400 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| | |||| ||||||| | || ||||||||| |
|
|
| T |
11618469 |
aggcgaaagttgcatttgctcggattgttaatttccttgaggcaccagaactgcagagtgaaaattttaggaacaggtgctttaaagatgacctcaaaga |
11618568 |
T |
|
| Q |
401 |
atcaatttcaataaaatctgctaacttttcatgggaaggtaatgcatcaaagccaaccctacggaacataaatttagaggtta |
483 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||| | ||||||||| | ||| |||||||||||||||| |||| |
|
|
| T |
11618569 |
cacaatttcaataaaatgtgccgacttttcatgggaaggtaactcgtcaaagccatcactaaggaacataaatttagatgtta |
11618651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 6 - 475
Target Start/End: Original strand, 11662990 - 11663459
Alignment:
| Q |
6 |
gctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatgttgtcgattttttaagaaatgtggaactgaaaatgttatatg |
105 |
Q |
| |
|
|||||||||| |||||||||| | ||| | ||||| ||||||| |||||||||| | | | || ||||||||||||||||| ||| || |||||| |
|
|
| T |
11662990 |
gctcttgtgagtatgaaagtgctaaagctatatgcatgggaaacacattttaaaagttctatagaaaaattaagaaatgtggaactcaaattgctatatg |
11663089 |
T |
|
| Q |
106 |
cagtgcaattaagacgaacatataacgtctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggatgttcc |
205 |
Q |
| |
|
|||||| | ||||| |||| | |||||||| ||||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| || | ||||| |
|
|
| T |
11663090 |
cagtgctactaagaaaggcatacattgtctttctattttggacctcgccggtgttggtatctgctgcttcttttatagcatgttacttcctgaaagttcc |
11663189 |
T |
|
| Q |
206 |
tttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattcaggca |
305 |
Q |
| |
|
||| | |||||| |||||||||||||| || |||||| | ||||||||||||||||||||| | || |||||||| |||| ||||| ||||| || |
|
|
| T |
11663190 |
tttgcgtgcaagcaatgttttcactttcgtagcaactttacgccttgttcaagagccaattctagcaatcccagatgttgttgctgtgattattcaagcc |
11663289 |
T |
|
| Q |
306 |
aaagttgcatttgctcgaattgttactttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaaggatcaa |
405 |
Q |
| |
|
||||| |||||| |||| ||| | ||| ||||| || |||||||||||||||||||||||||||||| |||| | |||| ||||||||||| ||| |
|
|
| T |
11663290 |
aaagtcgcattttctcggattcaaaattttcttgaggctccagaactgcagagtgaaaatttgaagaacatgtgcaataatgataacctcaaaggctcag |
11663389 |
T |
|
| Q |
406 |
tttcaataaaatctgctaacttttcatgggaaggtaatgcatcaaagccaaccctacggaacataaattt |
475 |
Q |
| |
|
||| ||||||||| || ||||||||||||||||||| |||||||| ||||| ||| | ||||||||||| |
|
|
| T |
11663390 |
ttttaataaaatcagccgacttttcatgggaaggtaaggcatcaaatccaacactaagaaacataaattt |
11663459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 133 - 472
Target Start/End: Complemental strand, 11710476 - 11710137
Alignment:
| Q |
133 |
tctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggatgttcctttacatgcaagtaatgttttcacttt |
232 |
Q |
| |
|
|||| |||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||| |
|
|
| T |
11710476 |
tcttcctcttttggagctcaccggtgttggtgtctgctgcttcttttctagcatgttacttccttaaaattcctttgcatgcaagtaatgttttcacttt |
11710377 |
T |
|
| Q |
233 |
tgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattcaggcaaaagttgcatttgctcgaattgttact |
332 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||| |||| || ||||| ||| ||||||||||||| |||||||||||||||||||| || || | |
|
|
| T |
11710376 |
tgtggcaacattaggccttgttcaagtgccaattacaggtataccggatgttattacggtgatcattcaagcaaaagttgcatttgctcggatatgtaat |
11710277 |
T |
|
| Q |
333 |
ttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaaggatcaatttcaataaaatctgctaacttttcat |
432 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||| || ||| || | |||||||||||| || ||| ||| ||||||||| || ||||||||| |
|
|
| T |
11710276 |
ttccttgaggcaccagaactaaagagtgaaagtttcaataacatcatctgtaatgacaacctcaggggctcagttttaataaaatcagccgacttttcat |
11710177 |
T |
|
| Q |
433 |
gggaaggtaatgcatcaaagccaaccctacggaacataaa |
472 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||||| |
|
|
| T |
11710176 |
gggaaggtaatgcatcaaagccaacactaagaaacataaa |
11710137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 183 - 328
Target Start/End: Complemental strand, 11739716 - 11739571
Alignment:
| Q |
183 |
gcatgttacttcttggatgttcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatg |
282 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | |||| | ||||| ||||||||||| | || ||| | ||||| |||||| ||| || || |||| |
|
|
| T |
11739716 |
gcatgttacttcttgaatgttcctttacatgcgaataatatattcacctttgtggcaacaatacgacttatgcaagatccaatttcaaccatccctgatg |
11739617 |
T |
|
| Q |
283 |
tcattgcggtgatcattcaggcaaaagttgcatttgctcgaattgt |
328 |
Q |
| |
|
| |||| ||||||||||| ||||| |||||||| |||| ||||| |
|
|
| T |
11739616 |
ttattggagtgatcattcaagcaaatattgcattttctcggattgt |
11739571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 11710603 - 11710546
Alignment:
| Q |
6 |
gctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatg |
63 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
11710603 |
gctcttgtgaatatgaaagtgctcaagttatatgcatgggaaaaccattttaaaaatg |
11710546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 11739893 - 11739836
Alignment:
| Q |
6 |
gctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatg |
63 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
11739893 |
gctctagtgaatgtgaaagtgttgaagttatatgcatgggaaacccattttaaaaatg |
11739836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 322
Target Start/End: Complemental strand, 12093941 - 12093805
Alignment:
| Q |
186 |
tgttacttcttggatgttcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtca |
285 |
Q |
| |
|
|||||| ||||| | |||||| | ||||||| |||||||||||| ||| | |||| ||||||||||| ||||| || ||| ||| ||| |||||| | |
|
|
| T |
12093941 |
tgttacctcttgaaagttcctctccatgcaaataatgttttcacatttatcacaaccgtgcgccttgtgcaagatcctatttcaaccattggagatgtta |
12093842 |
T |
|
| Q |
286 |
ttgcggtgatcattcaggcaaaagttgcatttgctcg |
322 |
Q |
| |
|
||| ||||||||||| ||||| ||||| ||| |||| |
|
|
| T |
12093841 |
ttggagtgatcattcaagcaaaggttgctttttctcg |
12093805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 322
Target Start/End: Original strand, 11755994 - 11756130
Alignment:
| Q |
186 |
tgttacttcttggatgttcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtca |
285 |
Q |
| |
|
|||||| ||||| | |||||| | ||||||| |||||||||||| ||| | |||| ||||||||||| ||||| || ||| ||| || |||||| | |
|
|
| T |
11755994 |
tgttacctcttgaaagttcctctccatgcaaataatgttttcacatttatcacaaccgtgcgccttgtgcaagatcctatttcaaccataggagatgtta |
11756093 |
T |
|
| Q |
286 |
ttgcggtgatcattcaggcaaaagttgcatttgctcg |
322 |
Q |
| |
|
||| ||||||||||| ||||| ||||| ||| |||| |
|
|
| T |
11756094 |
ttggagtgatcattcaagcaaaggttgctttttctcg |
11756130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 12094121 - 12094065
Alignment:
| Q |
6 |
gctcttgtgaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaat |
62 |
Q |
| |
|
||||| ||||||||||||||| | ||||| ||||| ||||||| |||||||||||| |
|
|
| T |
12094121 |
gctctggtgaatatgaaagtgctaaagttatatgcatgggaaatgcattttaaaaat |
12094065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 168; Significance: 8e-90; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 14 - 457
Target Start/End: Original strand, 12534 - 12977
Alignment:
| Q |
14 |
gaatatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatgttgtcgattttttaagaaatgtggaactgaaaatgttatatgcagtgcaa |
113 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||| ||||||||||| ||||| |||| ||||||||||||||||| ||| |||||| | | |||||| |
|
|
| T |
12534 |
gaatatgaaagtgttgaaactatatgcatgggaaaaccattttaaaaacgttgtagattgcttaagaaatgtggaactcaaattgttatcttccgtgcaa |
12633 |
T |
|
| Q |
114 |
ttaagacgaacatataacgtctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggatgttcctttacatg |
213 |
Q |
| |
|
|||||| ||||||| || ||||||||||||||| |||| || || |||| ||| ||| |||||| | ||||||||||||||||| ||||| || |||| |
|
|
| T |
12634 |
ttaagaagaacatacaatgtctttctcttttgggcctcaccaatactggtatctgttgcctcttttttggcatgttacttcttggaagttccattgcatg |
12733 |
T |
|
| Q |
214 |
caagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattcaggcaaaagttgc |
313 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||||||||| |||||| |||| ||||| ||||| ||| | | ||| ||||| || |||||||| |
|
|
| T |
12734 |
caagtaatgttttcacatttgtggcaactttgaaccttgttcaagatccaatttcaagcattccggatgttattacagcgattattcaagctaaagttgc |
12833 |
T |
|
| Q |
314 |
atttgctcgaattgttactttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaaggatcaatttcaata |
413 |
Q |
| |
|
|||||||||||||| | ||||||| |||| || || || |||| ||||||||||||| |||||||| || |||||||||| |||||||||||| |
|
|
| T |
12834 |
atttgctcgaattgctgttttccttaatgccccggagttgttgagtaaaaatttgaagaatgagtgcttccgtgttgacctcaaaggctcaatttcaata |
12933 |
T |
|
| Q |
414 |
aaatctgctaacttttcatgggaaggtaatgcatcaaagccaac |
457 |
Q |
| |
|
||||| ||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
12934 |
aaatccgctgacttttcatgggaaggcaatgcattaaagccaac |
12977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 8996 - 8542
Alignment:
| Q |
17 |
tatgaaagtgttgaagttgtatgcgtgggaaaatcattttaaaaatgttgtcgattttttaagaaatgtggaactgaaaatgttatatgcagtgcaatta |
116 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||| ||| ||||||||||||| ||| || ||| |||||||| ||| |
|
|
| T |
8996 |
tatgaaagtgttgaagttatatgcatgggaaacacattttaaaaatgttgtatattacttacgaaatgtggaactcaaattgctatcagcagtgcagtta |
8897 |
T |
|
| Q |
117 |
agacgaacatataacgtctttctcttttggacctcgccgatgttggtgtctactgcttcttttctagcatgttacttcttggatgttcctttacatgcaa |
216 |
Q |
| |
|
||| | | |||||| || ||||||| || || ||||||| ||| |||||||||||||||||||||| || || | |||||||| ||||||| |
|
|
| T |
8896 |
agaaaggcgttctctgtctttatcgtttggacatcaccattgttggtatctgctgcttcttttctagcatgttattttctgaaagttcctttgcatgcaa |
8797 |
T |
|
| Q |
217 |
gtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattcaggcaaaagttgcatt |
316 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| || ||||||| |||||| |||| || |||||||| ||||| ||||||||| ||||||||||||| || |
|
|
| T |
8796 |
gtaatgttttcactattgtggcaactttgcgtctcattcaagaaccaatttcaagcatcccagatgttattgcagtgatcattgaggcaaaagttgcgtt |
8697 |
T |
|
| Q |
317 |
tgctcgaattgttactttccttgatgcaccagaactgcagagtgaaaatttgaagaacgagtgctttgatgacaacctcaaaggatcaatttcaataaaa |
416 |
Q |
| |
|
|||| ||||||| ||||||||| ||||| ||||||||||| |||||||| ||||| | ||||| |||| ||||| ||||| ||||||||||||||| |
|
|
| T |
8696 |
ctctcggattgttaatttccttgaggcaccggaactgcagagagaaaatttcaagaaaaaatgcttcaatgataaccttaaaggctcaatttcaataaaa |
8597 |
T |
|
| Q |
417 |
tctgctaacttttcatgggaaggtaatgcatcaaagccaaccctacggaacataa |
471 |
Q |
| |
|
| | || |||||||||||||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
8596 |
tgttctgacttttcatgggaaggtaatgcatcaaaaccaacactaaggaacataa |
8542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 178 - 276
Target Start/End: Complemental strand, 38151541 - 38151443
Alignment:
| Q |
178 |
ttctagcatgttacttcttggatgttcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattc |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38151541 |
ttctagcatgttacttcttggatgttcctttgcatgcaagtaatgttttcacttttgttgcaactttgcgccttgttcaagagccaattacaagtattc |
38151443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 201 - 361
Target Start/End: Original strand, 44811770 - 44811930
Alignment:
| Q |
201 |
gttcctttacatgcaagtaatgttttcacttttgtggcaactgtgcgccttgttcaagagccaattacaagtattccagatgtcattgcggtgatcattc |
300 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||| |||||| | |||||||||||||| || |||| | || ||||| || |||| |||| | |||| |
|
|
| T |
44811770 |
gttcctttgcatgcaaataatgttttcacttttgtagcaactttacgccttgttcaagatccgattagatccatcccagacgttattggggtggttattc |
44811869 |
T |
|
| Q |
301 |
aggcaaaagttgcatttgctcgaattgttactttccttgatgcaccagaactgcagagtga |
361 |
Q |
| |
|
||||||||||||| || ||||| ||| | | |||||||| ||||| ||| | |||||||| |
|
|
| T |
44811870 |
aggcaaaagttgcgttcgctcggattctaaaattccttgaggcacctgaattacagagtga |
44811930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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