View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13832_high_11 (Length: 299)
Name: NF13832_high_11
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13832_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 5393456 - 5393729
Alignment:
| Q |
17 |
catgtaggaggggaggattcatcactaaatttttggcgtgactaagataataaagtcaaacaattctcccaatgaaatcaactataattttgatacgcat |
116 |
Q |
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| T |
5393456 |
catgtaggaggggaggattcatcactaaatttttggagtgactaagataataaagtcaaacaattctcccaatgaaatcaactataattttgatacgcat |
5393555 |
T |
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| Q |
117 |
tcaactaaaaatttcttactcaagattcctctcaattttgacatatacaaacacgtatgggtgtatatacatatacattctattcgtgtaggaatgaaag |
216 |
Q |
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| T |
5393556 |
tcaactaaaaatttcttactcaagattcctctcaattttgacatatacaaacacgtacgggtgtatatacatatacattctattcgtgtaggaatgaaag |
5393655 |
T |
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| Q |
217 |
tgaggatatcaaacgcattgttgacagagttgtacacttgtttagtttgaagccttcctcgtccacgcctatgc |
290 |
Q |
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| T |
5393656 |
tgaggatatcaaacgcattgttgacagagttgtacacttgtttagtttgaagccttcctcgtccacgcctatgc |
5393729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 5286467 - 5286395
Alignment:
| Q |
171 |
gtatgggtgtatatacatatacattctattcgtgtaggaatgaaagtgaggatatcaaacgcattgttgacag |
243 |
Q |
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| T |
5286467 |
gtatgtgtatatatacgtatacattctatttttgtaggaatgaaagtgaggatatcaaaggtattgttaacag |
5286395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 5262487 - 5262430
Alignment:
| Q |
171 |
gtatgggtgtatatacatatacattctattcgtgtaggaatgaaagtgaggatatcaa |
228 |
Q |
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| T |
5262487 |
gtatgtgtatatatacgtacacattctatttgtgtaggaatgaaagtgaggatatcaa |
5262430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 5444748 - 5444812
Alignment:
| Q |
178 |
tgtatatacatatacattctattcgtgtaggaatgaaagtgaggatatcaaacgcattgttgaca |
242 |
Q |
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| T |
5444748 |
tgtatacatatatacattttatttttgtaggaatgaaagtgaggatgtcaaaggtattgttgaca |
5444812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 22586650 - 22586602
Alignment:
| Q |
180 |
tatatacatatacattctattcgtgtaggaatgaaagtgaggatatcaa |
228 |
Q |
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| T |
22586650 |
tatatacgtatacattctatttttgtaggaatgaaagtgagtatatcaa |
22586602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 22591138 - 22591096
Alignment:
| Q |
205 |
taggaatgaaagtgaggatatcaaacgcattgttgacagagtt |
247 |
Q |
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| T |
22591138 |
taggaatgaaagtgatgatatcaaacatattgttgacagagtt |
22591096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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