View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13832_high_12 (Length: 257)

Name: NF13832_high_12
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13832_high_12
NF13832_high_12
[»] chr5 (14 HSPs)
chr5 (45-156)||(40987338-40987449)
chr5 (55-157)||(13554765-13554867)
chr5 (46-156)||(33160516-33160626)
chr5 (65-156)||(13521489-13521580)
chr5 (65-156)||(27110653-27110744)
chr5 (72-156)||(1495912-1495996)
chr5 (67-154)||(41061203-41061290)
chr5 (56-156)||(12291376-12291476)
chr5 (70-157)||(4986178-4986265)
chr5 (52-147)||(20210050-20210145)
chr5 (49-156)||(35449648-35449754)
chr5 (65-156)||(42716135-42716226)
chr5 (53-120)||(25932182-25932249)
chr5 (110-154)||(7946536-7946580)
[»] chr4 (21 HSPs)
chr4 (45-156)||(24575154-24575265)
chr4 (45-156)||(9279923-9280034)
chr4 (46-156)||(47498838-47498948)
chr4 (45-138)||(7700297-7700390)
chr4 (49-156)||(42414550-42414657)
chr4 (65-156)||(46251940-46252031)
chr4 (45-157)||(18780926-18781038)
chr4 (49-156)||(3756961-3757068)
chr4 (65-156)||(34276946-34277037)
chr4 (90-155)||(47997031-47997096)
chr4 (65-156)||(42429987-42430078)
chr4 (65-157)||(24859005-24859097)
chr4 (94-156)||(37602649-37602711)
chr4 (45-156)||(7611684-7611794)
chr4 (76-138)||(6184090-6184152)
chr4 (94-144)||(31568178-31568228)
chr4 (71-157)||(56078434-56078520)
chr4 (65-154)||(20580592-20580681)
chr4 (60-157)||(24319039-24319136)
chr4 (65-138)||(40436458-40436531)
chr4 (91-155)||(8738281-8738345)
[»] chr7 (11 HSPs)
chr7 (45-155)||(1575842-1575952)
chr7 (65-156)||(27392589-27392680)
chr7 (46-156)||(323603-323713)
chr7 (65-157)||(28694685-28694777)
chr7 (69-157)||(36482646-36482734)
chr7 (49-156)||(6714212-6714319)
chr7 (46-156)||(10286412-10286515)
chr7 (69-153)||(36582534-36582618)
chr7 (65-154)||(31280189-31280278)
chr7 (106-154)||(8937846-8937894)
chr7 (116-155)||(29988049-29988088)
[»] chr8 (17 HSPs)
chr8 (45-156)||(43620036-43620147)
chr8 (45-156)||(26721155-26721266)
chr8 (45-138)||(1265121-1265214)
chr8 (65-156)||(31127268-31127359)
chr8 (65-154)||(6345305-6345394)
chr8 (65-154)||(37948952-37949041)
chr8 (45-156)||(13470862-13470973)
chr8 (46-156)||(4602594-4602704)
chr8 (70-157)||(26721290-26721377)
chr8 (54-156)||(32906901-32907003)
chr8 (49-156)||(4267343-4267450)
chr8 (45-156)||(42200065-42200176)
chr8 (65-154)||(3106183-3106272)
chr8 (45-154)||(10183231-10183339)
chr8 (70-149)||(27808983-27809062)
chr8 (59-157)||(3773819-3773915)
chr8 (65-105)||(40619728-40619768)
[»] chr6 (7 HSPs)
chr6 (45-156)||(7608279-7608390)
chr6 (46-156)||(21946708-21946818)
chr6 (65-157)||(16705374-16705459)
chr6 (59-155)||(3901145-3901241)
chr6 (76-154)||(10484409-10484487)
chr6 (73-154)||(10386152-10386232)
chr6 (65-149)||(33747876-33747960)
[»] chr2 (8 HSPs)
chr2 (45-156)||(16672010-16672122)
chr2 (68-157)||(21352330-21352419)
chr2 (46-156)||(18511555-18511658)
chr2 (49-156)||(42295812-42295918)
chr2 (45-148)||(7753802-7753902)
chr2 (114-156)||(10997250-10997292)
chr2 (70-154)||(22596075-22596159)
chr2 (70-143)||(34439851-34439924)
[»] chr3 (12 HSPs)
chr3 (45-138)||(37282644-37282737)
chr3 (45-138)||(19636545-19636638)
chr3 (46-156)||(32055869-32055979)
chr3 (46-157)||(25706298-25706410)
chr3 (49-156)||(1030459-1030566)
chr3 (45-155)||(19997373-19997484)
chr3 (45-155)||(29282999-29283104)
chr3 (70-138)||(39717244-39717312)
chr3 (45-96)||(48973739-48973790)
chr3 (45-155)||(27167802-27167911)
chr3 (90-156)||(40166829-40166895)
chr3 (65-143)||(48085314-48085392)
[»] chr1 (12 HSPs)
chr1 (69-156)||(14461714-14461801)
chr1 (65-155)||(5559392-5559482)
chr1 (45-157)||(24063911-24064023)
chr1 (59-156)||(41198518-41198615)
chr1 (49-157)||(24614740-24614848)
chr1 (65-157)||(41074900-41074992)
chr1 (52-157)||(7004672-7004777)
chr1 (64-154)||(33719608-33719698)
chr1 (59-154)||(16902572-16902667)
chr1 (66-156)||(28655578-28655668)
chr1 (95-156)||(35672144-35672205)
chr1 (65-105)||(11956335-11956375)
[»] scaffold0034 (1 HSPs)
scaffold0034 (72-154)||(47780-47862)
[»] scaffold0717 (1 HSPs)
scaffold0717 (70-154)||(5490-5574)
[»] scaffold0140 (1 HSPs)
scaffold0140 (69-155)||(15489-15575)
[»] scaffold0396 (1 HSPs)
scaffold0396 (49-138)||(1267-1356)


Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 40987449 - 40987338
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40987449 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 40987350  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  40987349 caaaaatattcg 40987338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 13554867 - 13554765
Alignment:
Q  55 ggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||| |||||| |||||||||||||||| ||||| ||||||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||    
T  13554867 ggttcggcttggtttggttcggttttgaaaatgcaattcgaaatccgatctaattatagcggtttttccaaaacaacatccaaacacatctaaaaatatt 13554768  T
Q  155 cga 157  Q
    |||    
T  13554767 cga 13554765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 33160626 - 33160516
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| |||||| ||||||||| |  ||||||||||||| | ||||||| | |||||||||||||||| |||||||||||||    
T  33160626 tacttttgcggttcggttcggtttggttcgattttgaaaaggtgatccgaaatccgaactgatcataacagtttttccaaaacaacctccaaacacatcc 33160527  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  33160526 aaaaatattcg 33160516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 13521580 - 13521489
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||||||||||||||||||| |||||  |||||||||||   ||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  13521580 ggttcggttcggttttgaaaatgcaatttgaaatccgatctagtcatagcggttattccaaaacaacatctaaacacatccaaaaatattcg 13521489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 27110744 - 27110653
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||||||||||||||| ||| |  ||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  27110744 ggttcggttcggttttggaaaagtgatccagaatccgatccgatcttagcggtttttacaaaacaacatccaaacacatccaaatatattcg 27110653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 1495912 - 1495996
Alignment:
Q  72 ttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||||||||||||| |  |||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||    
T  1495912 ttcggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaacacatccaaatatattcg 1495996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 41061290 - 41061203
Alignment:
Q  67 ttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||||| | ||||| ||||||| ||||||| ||||||||||| |||||||| |||||||| |||||||| |||||    
T  41061290 ttcggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaacgcatccaaatatatt 41061203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 12291376 - 12291476
Alignment:
Q  56 gttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| ||||||||||||||||| |||||||     ||| ||||||||||| ||| ||| ||||||| ||||||||||||||||  |||||||||||||||    
T  12291376 gttcagtttggttcggttcggtattgaaaaaatggtccaaaatccgatccaatcttagaggtttttacaaaacaacatccaaatgcatccaaaaatattc 12291475  T
Q  156 g 156  Q
    |    
T  12291476 g 12291476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 4986265 - 4986178
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    |||||||||||||||| |  |||| ||||| |||  |||| ||| ||||| | ||||||||||||||||| |||| ||||||||||||    
T  4986265 ggttcggttttgaaaaagtgatcctaaatctgatttgatcctagtggtttatacaaaacaacatccaaacgcatcaaaaaatattcga 4986178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 20210050 - 20210145
Alignment:
Q  52 tgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaa 147  Q
    ||||||||||||||||| |||| |||||||||||  |||||| |||| |||||| |||  |||||||||   |||| | ||||||||||| |||||    
T  20210050 tgcggttcggtttggtttggtttggttttgaaaattcaatccaaaatacgatccaatctgagcggttttcataaaatatcatccaaacacgtccaa 20210145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 35449648 - 35449754
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||| |||  |||| |||||  ||||||||| |  |||| ||| |||| |||||| ||||||||||| ||||||||||||||||| |||| |||    
T  35449648 ttttgcggttaggtacggtttggttcaattttgaaaa-gtgatccaaaagccgaaccgatcttagcggtttttacaaaacaacatccaaacgcatctaaa 35449746  T
Q  149 aatattcg 156  Q
     |||||||    
T  35449747 tatattcg 35449754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 42716135 - 42716226
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||| ||||| |||||||||| | |||||||||||  |  ||||| ||||  ||||| ||||||||||||||||| ||| ||||||||||||    
T  42716135 ggtttggttcagttttgaaaaagtaatccgaaatctaaatcgatcctagctttttttacaaaacaacatccaaacgcattcaaaaatattcg 42716226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 25932249 - 25932182
Alignment:
Q  53 gcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttt 120  Q
    ||||||| |||||||| |||| |||||||||||  |||||| ||||||||||| |||  |||||||||    
T  25932249 gcggttctgtttggtttggtttggttttgaaaattcaatccaaaatccgatccaatccgagcggtttt 25932182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 7946536 - 7946580
Alignment:
Q  110 atagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||| ||||||||||| ||| | ||||||||||||||    
T  7946536 atagcggtttttacaaaacaacattcaagcgcatccaaaaatatt 7946580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 24575154 - 24575265
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24575154 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 24575253  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  24575254 caaaaatattcg 24575265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 9280034 - 9279923
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9280034 ttacttttgcggttaggttaggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatc 9279935  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  9279934 caaaaatattcg 9279923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 47498838 - 47498948
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||||||||||||||| |||| |  ||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  47498838 tacttttgcggttcggttcggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatcatagcggtttttccaaaacaacatccaaacacatcc 47498937  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  47498938 aaaaatattcg 47498948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 7700390 - 7700297
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||    
T  7700390 ttacttttgtggtttggtttggttcggttcagttttgaaaacgcaatctgaaattcgatccgatcatagcggtttttctaaaacaacatccaaa 7700297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 42414550 - 42414657
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| |||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  42414550 ttttgcggttcggttcggtttggttcggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 42414649  T
Q  149 aatattcg 156  Q
     |||||||    
T  42414650 tatattcg 42414657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 46251940 - 46252031
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||||||||||||||||||| |  ||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46251940 ggttcggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggcttttccaaaacaacatccaaacacatccaaaaatattcg 46252031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 18780926 - 18781038
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||  |||| ||||| ||   ||||||||||| ||| ||||||| |||| ||||||| ||||||||||||||||| || ||||||||||    
T  18780926 ttacttttgcggtttagtttagttcgattttattttgaaaacgtaattcgaaatctgatctgatcataacggtttttccaaaacaaaattcaaacacatc 18781025  T
Q  145 caaaaatattcga 157  Q
    |||||||||||||    
T  18781026 caaaaatattcga 18781038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 3757068 - 3756961
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||||| || |||| |||||||||||||||| |  |||||||||||||||||||| || ||||||||  |||||||||| ||||| ||||||||    
T  3757068 ttttgcggttcgattcggtttggttcggttttgaaaaagtgatccgaaatccgatccgatcttaacggtttttaaaaaacaacattcaaacgcatccaaa 3756969  T
Q  149 aatattcg 156  Q
     |||||||    
T  3756968 catattcg 3756961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 34277037 - 34276946
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||||||||| ||||||||| |  ||||  ||| |||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||    
T  34277037 ggttcggttcgattttgaaaaagtgatccagaattcgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcg 34276946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 47997031 - 47997096
Alignment:
Q  90 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||| ||||||||||    
T  47997031 atccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagcacatcgaaaaatattc 47997096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 42430078 - 42429987
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||| |||| ||||||||||| |  ||||||||| ||||||||||  |||||||||| |||||||||||||||||  ||||||| |||||||    
T  42430078 ggtttggtttggttttgaaaaagtgatccgaaattcgatccgatctgagcggtttttacaaaacaacatccaaacggatccaaatatattcg 42429987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 24859097 - 24859005
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    |||||||||||||||||||||  |||||| ||||||||||| |||  | |||||||  |||||   ||||||||||||||||| |||||||||    
T  24859097 ggttcggttcggttttgaaaaatcaatccaaaatccgatccaatccaaacggttttcacaaaatgtcatccaaacacatccaataatattcga 24859005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 37602649 - 37602711
Alignment:
Q  94 gaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||||| ||||||||| |||| |||||| ||||| ||||| ||||||||||||||||||||||    
T  37602649 gaaatcagatccgatcctagcagtttttacaaaagaacattcaaacacatccaaaaatattcg 37602711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 7611794 - 7611684
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||| | ||||||||| ||| ||||||||||||| ||    ||| |||||| |||| |||| ||||||||||| ||||| || |||||||| || |    
T  7611794 ttacttttacagttcggtttagtttggttcggttttgagaaaatgatctgaaatctgatctgatcctagcggtttttacaaaataa-atccaaacgcaac 7611696  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  7611695 caaaaatattcg 7611684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 6184090 - 6184152
Alignment:
Q  76 gttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    |||||||||| |  |||||||||||||||||||| || || ||||| ||||||||||||||||    
T  6184090 gttttgaaaaagtgatccgaaatccgatccgatcctaacgatttttacaaaacaacatccaaa 6184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 31568178 - 31568228
Alignment:
Q  94 gaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||| || ||||||||||| ||||||||||||||| ||||||    
T  31568178 gaaatccgatccggtcttagcggtttttacaaaacaacatccaaccacatc 31568228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 56078520 - 56078434
Alignment:
Q  71 gttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    ||||||||||||||| |  ||  ||||||||||||||||| | |  ||||| | ||||||||||||||| ||||| |||||||||||    
T  56078520 gttcggttttgaaaaagtgatttgaaatccgatccgatcacaacaatttttactaaacaacatccaaacgcatccgaaaatattcga 56078434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 20580681 - 20580592
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||| ||||||||||| |  ||| |||||||||||||||| ||||  || || ||||||||||| ||| | ||||||||||||||    
T  20580681 ggtttggtttggttttgaaaaagtgatctgaaatccgatccgatcctagcaattcttacaaaacaacattcaagcgcatccaaaaatatt 20580592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 157
Target Start/End: Complemental strand, 24319136 - 24319039
Alignment:
Q  60 ggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    |||| |||| ||||||||||||| || |  |||| |||| | | |||||| || |||||||   |||||||||||||||| |||||||||||||||||    
T  24319136 ggttcggtttggttcggttttgagaaagtgatccaaaattcaaaccgatcctaacggttttgataaaacaacatccaaacgcatccaaaaatattcga 24319039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 40436531 - 40436458
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||| ||||||||||| |  ||||||| ||||||| |||| || |  ||||| ||||||||||||||||    
T  40436531 ggttcggtttggttttgaaaaagtgatccgaagtccgatctgatcgtaacaatttttacaaaacaacatccaaa 40436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 8738345 - 8738281
Alignment:
Q  91 tccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||| | ||||||  ||||| ||||| ||||||||||||||||  |||| ||||||||||    
T  8738345 tccgaaatctgctccgatactagcgatttttacaaaacaacatccaaatgcatcaaaaaatattc 8738281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 1575952 - 1575842
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1575952 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 1575853  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  1575852 caaaaatattc 1575842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 65 - 156
Target Start/End: Complemental strand, 27392680 - 27392589
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27392680 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggttttttcaaaacaacatccaaacacatccaaaaatattcg 27392589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 323603 - 323713
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    ||||||||||||||||||  ||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  323603 tacttttgcggttcggttctgtttggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatcc 323702  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  323703 aaaaatattcg 323713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 28694777 - 28694685
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  28694777 ggttcggtttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacatccaaacacataaaaaaatattcga 28694685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 157
Target Start/End: Original strand, 36482646 - 36482734
Alignment:
Q  69 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    |||||||||||||||||  |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  36482646 cggttcggttttgaaaagacaatccgaaaaccgatccgatcatagtggtttttctaaaacaacatccaaacacatccaaaaatattcga 36482734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 6714212 - 6714319
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||| ||||||||||||||| ||||||| || |  || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  6714212 ttttgcggtttggtttggttcggttcagttttgagaaagtgattcgaaatccgatccgatcctagcggtttttacaaaataacatccaaacacatccaaa 6714311  T
Q  149 aatattcg 156  Q
     |||||||    
T  6714312 tatattcg 6714319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 10286515 - 10286412
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| |||||||||||||||| |  |||||||       || || ||||||||||| ||||||||||||||||||||||||    
T  10286515 tacttttgcggttcggttcggtttggttcggttttgaaaaggtgatccgaa-------ccaattatagcggttttgccaaaacaacatccaaacacatcc 10286423  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  10286422 aaaaatattcg 10286412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 36582534 - 36582618
Alignment:
Q  69 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatat 153  Q
    ||||||||||||||||| |  ||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||||||| ||||    
T  36582534 cggttcggttttgaaaaagtgatccgaaatccgatcagatcttagcggtttttacaaaacaacatccaaacgcatccaaatatat 36582618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 31280189 - 31280278
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||||||||||| |  |||| ||||||||||||||| || || ||||| |||||||||||||||||  ||||||| |||||    
T  31280189 ggttcggttcggttttgaaaaagtgatccaaaatccgatccgatcttaacgatttttacaaaacaacatccaaacgtatccaaatatatt 31280278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 8937846 - 8937894
Alignment:
Q  106 gatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  8937846 gatcctagcggtttttacaaaacaacatccaaacgcatccaaaaatatt 8937894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 29988049 - 29988088
Alignment:
Q  116 gtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  29988049 gtttttacaaaacaacatccaaacacatccaaaaatattc 29988088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 43620036 - 43620147
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43620036 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaagcaacatccaaacacatc 43620135  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  43620136 caaaaatattcg 43620147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 26721155 - 26721266
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  26721155 ttacttttgcggtttggtttggttcggttcggttttgaaaacgcaatccaaaataagatccgatcatagcggtttttccaaaacaacatccaaacacatc 26721254  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  26721255 caaaaatattcg 26721266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 1265214 - 1265121
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1265214 ttacttttgcggttcggtttggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 1265121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 31127268 - 31127359
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31127268 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 31127359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 6345394 - 6345305
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6345394 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 6345305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 37948952 - 37949041
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37948952 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 37949041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 13470973 - 13470862
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| ||||||||| |||||||||||||||| |||| |||||| ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  13470973 ttacttttgcggtttggtttggtttggttcggttttgaaaaggcaaaccgaaaaccgatccgatcgtagcgttttttccaaaacaacatccaaacacatc 13470874  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  13470873 caaaaatattcg 13470862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 4602704 - 4602594
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| |||||||||||||||||||| |||    
T  4602704 tacttttgcggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacgtcc 4602605  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  4602604 aaaaatattcg 4602594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 70 - 157
Target Start/End: Original strand, 26721290 - 26721377
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    |||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26721290 ggttcggttttgaaaacgcaatccgaaatctgatttgatcatagcggtttttccaaaacaacgtccaaacacatccaaaaatattcga 26721377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 32907003 - 32906901
Alignment:
Q  54 cggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatat 153  Q
    |||||||||| |||| |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  32907003 cggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaatat 32906904  T
Q  154 tcg 156  Q
    |||    
T  32906903 tcg 32906901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 4267450 - 4267343
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| |||| |||||||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||    
T  4267450 ttttgcggttcggttcggtttggttcggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaacgcatccaaa 4267351  T
Q  149 aatattcg 156  Q
     |||||||    
T  4267350 tatattcg 4267343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 42200065 - 42200176
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||| |||| | |  ||| |||| || |  ||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||    
T  42200065 ttacttttgcggttcggttcggtttgatctggtattgagaaagtgatccgaaattcgatccgatcataacggtttttataaaacaacatccaaacacatc 42200164  T
Q  145 caaaaatattcg 156  Q
     |||||||||||    
T  42200165 taaaaatattcg 42200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 3106272 - 3106183
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||||| || |  |||| ||||||||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||    
T  3106272 ggttcggttcggttttgagaaagtgatccaaaatccgatacgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaatatt 3106183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 10183231 - 10183339
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||| |||| ||||||||| | |||  |||||||||  | || ||||||||||||| ||| || | ||||||   ||||||||||||||||||||    
T  10183231 ttacttttgtggttaggtttggtttgattca-ttttgaaaaatcgattcgaaatccgatccaatcttaacagtttttaggaaacaacatccaaacacatc 10183329  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  10183330 caaaaatatt 10183339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 27808983 - 27809062
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 149  Q
    |||||||||||||||| |   || |||||||||||||||| || |||||||| | || |||||| |||||||||||||||    
T  27808983 ggttcggttttgaaaaagtggtctgaaatccgatccgatcttaacggtttttactaaccaacattcaaacacatccaaaa 27809062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 3773915 - 3773819
Alignment:
Q  59 cggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    ||||| |||| |||| ||||||||||| |  |||| ||||||||||| ||| ||| ||||||| |||| |||||||||||| |||||||| ||||||||    
T  3773915 cggttcggtttggtttggttttgaaaaagtgatccaaaatccgatcc-atcttagtggtttttacaaa-caacatccaaacgcatccaaatatattcga 3773819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 40619728 - 40619768
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatcc 105  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  40619728 ggttcggttcggttttgaaaaatcaatccaaaatccgatcc 40619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 45 - 156
Target Start/End: Original strand, 7608279 - 7608390
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7608279 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatc 7608378  T
Q  145 caaaaatattcg 156  Q
    ||||||||||||    
T  7608379 caaaaatattcg 7608390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 21946818 - 21946708
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    ||||||||||||||||||||||| ||||||||||||||||    ||||||||||||| || || |||||||||||||||||||||||||||||||||||     
T  21946818 tacttttgcggttcggtttggtttggttcggttttgaaaagctgatccgaaatccgaaccaattatagcggtttttccaaaacaacatccaaacacatca 21946719  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  21946718 aaaaatattcg 21946708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 16705374 - 16705459
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16705374 ggttcggttcggttttgaaaacgcaatc-------cgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 16705459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 3901145 - 3901241
Alignment:
Q  59 cggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||| |||||||||||||||| |||| |  ||||||| ||| ||| |||| | ||||||||  |||||||||||||||||||||||||||||||||    
T  3901145 cggttcggttcggttcggttttaaaaaagtgatccgaagtccaatctgatcttggcggttttggcaaaacaacatccaaacacatccaaaaatattc 3901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 10484409 - 10484487
Alignment:
Q  76 gttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||  || ||||||||||||| |||  |||||||||    
T  10484409 gttttgagaaagcaatccgaaatccaatccgatcatagcggtttttagaagacaacatccaaacgcattaaaaaatatt 10484487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 10386232 - 10386152
Alignment:
Q  73 tcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||||| |  ||||||||||||||  |||| ||||||||||| ||||||||||||| ||  ||||||||| ||||    
T  10386232 tcggttttgaaaa-gtgatccgaaatccgatatgatcctagcggtttttacaaaacaacatccgaatgcatccaaaagtatt 10386152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 33747960 - 33747876
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaa 149  Q
    ||||| ||| ||||||||||| || |||||||||  ||||| ||| ||||| ||| | ||||||||| || ||||||||||||||    
T  33747960 ggttcagttaggttttgaaaaagctatccgaaatatgatccaatcttagcgctttctacaaaacaacttctaaacacatccaaaa 33747876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 16672122 - 16672010
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaa-acacat 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  16672122 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcagtttttccaaaacaacatccaacacacat 16672023  T
Q  144 ccaaaaatattcg 156  Q
    |||||||||||||    
T  16672022 ccaaaaatattcg 16672010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 21352330 - 21352419
Alignment:
Q  68 tcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    ||||| |||||||||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  21352330 tcggtacggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattcga 21352419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 156
Target Start/End: Complemental strand, 18511658 - 18511555
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| |||||||||||||||| |  |||||||       || || ||||||||||| ||||||||||||||||||||||||    
T  18511658 tacttttgcggttcggttcggtttggttcggttttgaaaaggtgatccgaa-------ccaattatagcggttttgccaaaacaacatccaaacacatcc 18511566  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  18511565 aaaaatattcg 18511555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 42295812 - 42295918
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||| |||||||| |||| |||||| ||||||||| |  |||||||| |||| |||||| |||| |||||| ||||||||||| ||||| ||||||||    
T  42295812 ttttgcagttcggttcggtttggttcgattttgaaaa-gtgatccgaaagccgaaccgatcttagcagtttttacaaaacaacatacaaacgcatccaaa 42295910  T
Q  149 aatattcg 156  Q
     |||||||    
T  42295911 tatattcg 42295918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 7753902 - 7753802
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||| ||||| ||||||||| |||  ||| ||||||||||| |  ||| |||||||||||||||||||   |||||| |||||||||||| |||||||||    
T  7753902 ttacctttgcagttcggttttgttttgtttggttttgaaaaagttatctgaaatccgatccgatcata---gtttttacaaaacaacatcaaaacacatc 7753806  T
Q  145 caaa 148  Q
    ||||    
T  7753805 caaa 7753802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 10997292 - 10997250
Alignment:
Q  114 cggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  10997292 cggtttttacaaaacaacatccaaacacatccaaaaatattcg 10997250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 22596159 - 22596075
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||| |  ||||||||||||||| |||| ||||| ||||| |||||||||||| |||  |||||||| |||||    
T  22596159 ggtttggttttgaaaaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaacatcgaaatgcatccaaatatatt 22596075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 34439924 - 34439851
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacat 143  Q
    |||||||||||||||| | |||||| |||||||||| ||  ||||||||||| ||||  ||||| |||||||||    
T  34439924 ggttcggttttgaaaaagtaatccggaatccgatccaattctagcggtttttacaaactaacattcaaacacat 34439851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 37282644 - 37282737
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37282644 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 37282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 19636545 - 19636638
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  19636545 ttacttttgcggttgggtttggttcggttcggttttgaaaactcaatccgaaatccgatccgatcatcgcggcttttccaaaacaacatccaaa 19636638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 32055869 - 32055979
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| | || |||||||||||||||| |  ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||    
T  32055869 tacttttgcggttcggttcgatttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatcc 32055968  T
Q  146 aaaaatattcg 156  Q
    |||||||||||    
T  32055969 aaaaatattcg 32055979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 25706410 - 25706298
Alignment:
Q  46 tacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggt-ttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||| |||| |||||||||||||||| |  ||| ||| ||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  25706410 tacttttgcggttcggttcggtttggttcggttttgaaaaggttatctgaagtccgaaccgatcatagcggtttttttcaaaacaacatccaaacacatc 25706311  T
Q  145 caaaaatattcga 157  Q
    |||||||||||||    
T  25706310 caaaaatattcga 25706298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 156
Target Start/End: Complemental strand, 1030566 - 1030459
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||| ||| |||| |||||||||| ||||| |  |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||    
T  1030566 ttttgcggttcagttcggtttggttcggtttcgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 1030467  T
Q  149 aatattcg 156  Q
     |||||||    
T  1030466 tatattcg 1030459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 19997484 - 19997373
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaa-tccgatccgatcatagcggtttttccaaaacaacatccaaacacat 143  Q
    ||||||||||||||| ||| |||| |||||||||||||||| |  |||||||| |||||||||||| |||| |||||| | | |||||||| |||| |||    
T  19997484 ttacttttgcggttcagttcggtttggttcggttttgaaaaagtgatccgaaaatccgatccgatcttagcagtttttacgagacaacatctaaacgcat 19997385  T
Q  144 ccaaaaatattc 155  Q
    ||||| ||||||    
T  19997384 ccaaatatattc 19997373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 29283104 - 29282999
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||| ||||||||||  |||||| || |  |||||||||||| |||     ||||||||||| ||||||||||||||||  ||||    
T  29283104 ttacttttgcggttcggttcggttcggttcaattttgagaaagtgatccgaaatccgttcc-----tagcggtttttacaaaacaacatccaaatgcatc 29283010  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  29283009 caaaaatattc 29282999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 39717244 - 39717312
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    ||||||||||| |||| |  |||| |||||||| |||||||||||||||||||||| ||||||||||||    
T  39717244 ggttcggttttcaaaaggtgatccaaaatccgaaccgatcatagcggtttttccaatacaacatccaaa 39717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 48973739 - 48973790
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaa 96  Q
    |||||||||| ||||||||||||||||||||||||| |||| | ||||||||    
T  48973739 ttacttttgcagttcggtttggttcggttcggttttcaaaaggaaatccgaa 48973790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 27167802 - 27167911
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||| ||||||| | |||  |||| |||| |  ||| ||||||||||  || | ||||||||||| ||||||| ||| ||||| ||||    
T  27167802 ttacttttgcggttcgatttggtttgattcaattttaaaaaagtgatctgaaatccgatatgacc-tagcggtttttacaaaacagcattcaaacgcatc 27167900  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  27167901 caaaaatattc 27167911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 40166829 - 40166895
Alignment:
Q  90 atccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||||| ||||||||  ||| ||||||||||| ||||||||||| |||||||||| ||| |||||||    
T  40166829 atccgatatccgatcgaatcttagcggtttttacaaaacaacattcaaacacatctaaatatattcg 40166895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 48085314 - 48085392
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacat 143  Q
    |||| |||||||||||||||| |  ||||||||||||||  |||   | || ||||| |||||||||||||||||||||    
T  48085314 ggtttggttcggttttgaaaaagtgatccgaaatccgatttgataccatcgctttttacaaaacaacatccaaacacat 48085392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 14461801 - 14461714
Alignment:
Q  69 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14461801 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 14461714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 5559482 - 5559392
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5559482 ggttcggtttggttttgaaaatgcaatccgaaatctgatccgatcatggcggtttttccaaaacaacatccaaacacatccaaaaatattc 5559392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 24063911 - 24064023
Alignment:
Q  45 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||| ||||||||| |||| | || ||||||||||| |  |||||||||||||||| |||||||||||||||||||||||||||||| |||||      
T  24063911 ttacttttgtggttcggttcggtttgatttggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacacaat 24064010  T
Q  145 caaaaatattcga 157  Q
    ||| |||||||||    
T  24064011 caataatattcga 24064023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 41198518 - 41198615
Alignment:
Q  59 cggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    ||||| |||| ||||| |||||| ||| |  |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  41198518 cggttcggtttggttcagttttggaaaagtgatccgaaatccgatccgatcttagcggtttttacaaaacaacatccaatcacatccaaatatattcg 41198615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 24614848 - 24614740
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| |||| ||||||||||| |||| |  |||| ||||| ||||||||| ||||||||||| |||||| |||||||||  ||||||||    
T  24614848 ttttgcggttcggttcggtttggttcggttttaaaaaagtgatccaaaatctgatccgatcttagcggtttttacaaaacgacatccaaaagcatccaaa 24614749  T
Q  149 aatattcga 157  Q
     ||||||||    
T  24614748 tatattcga 24614740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 41074992 - 41074900
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcga 157  Q
    ||||||||| ||||||||| | |  ||||||||| | ||| || ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41074992 ggttcggtttggttttgaagaggtgatccgaaattcaatctgaccatagcggttttttcaaaacaacatccaaacacatccaaaaatattcga 41074900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 7004777 - 7004672
Alignment:
Q  52 tgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaat 151  Q
    ||||||||||||  ||| ||||||||||||||||  |||||| ||||||||||| |||  |||||||||  |||||   ||| ||||||||||||| |||    
T  7004777 tgcggttcggttcagtttggttcggttttgaaaaatcaatccaaaatccgatccaatccaagcggttttcacaaaatgtcattcaaacacatccaataat 7004678  T
Q  152 attcga 157  Q
    ||||||    
T  7004677 attcga 7004672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 33719608 - 33719698
Alignment:
Q  64 tggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||| |||| |||||||||| |  ||| |||||  ||| ||||| |||| |||||| ||||||||||||||||| ||||||||||||||    
T  33719608 tggttcagttcagttttgaaaaagtgatctgaaatttgattcgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaatatt 33719698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 16902667 - 16902572
Alignment:
Q  59 cggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| |||| |||||||||||||||| |  |||| ||||   ||| |||| | || |||||| |||||||||||||||||||||| |||||||||    
T  16902667 cggttcggtttggttcggttttgaaaaagtgatccaaaatttaatctgatccttgcagtttttgcaaaacaacatccaaacacatctaaaaatatt 16902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 28655668 - 28655578
Alignment:
Q  66 gttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||||||| |||||||| || |  ||| ||||| |||||||||| ||  | ||||| |||||||||||||||||||||| ||| |||||||    
T  28655668 gttcggtttggttttgagaaagtgatctgaaattcgatccgatcctattgatttttacaaaacaacatccaaacacatcgaaatatattcg 28655578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Original strand, 35672144 - 35672205
Alignment:
Q  95 aaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattcg 156  Q
    |||| ||||| |||| |||||||||||  |||| |||||||||||||||| ||| |||||||    
T  35672144 aaattcgatctgatcttagcggtttttaaaaaataacatccaaacacatctaaatatattcg 35672205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 11956335 - 11956375
Alignment:
Q  65 ggttcggttcggttttgaaaacgcaatccgaaatccgatcc 105  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  11956335 ggttcggttcggttttgaaaaatcaatccaaaatccgatcc 11956375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 47780 - 47862
Alignment:
Q  72 ttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||||| || |  ||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  47780 ttcggttttgagaaagtgatccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaacacatccacaaatatt 47862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 5574 - 5490
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||| |  |||  ||||||||||||||| ||||| || || ||||||||||||||| | ||||||||||||||    
T  5574 ggtttggttttgaaaaagtgatcttaaatccgatccgatcctagcgattcttacaaaacaacatccaagcgcatccaaaaatatt 5490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 15575 - 15489
Alignment:
Q  69 cggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||| ||||||||||| |  ||||||||||  |||||||| ||||  ||||| |||||||||| |||||| |||| ||||||||||    
T  15575 cggtttggttttgaaaaagttatccgaaatctaatccgatcctagctatttttacaaaacaacaaccaaacgcatctaaaaatattc 15489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 1267 - 1356
Alignment:
Q  49 ttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 138  Q
    |||||||||| |||| ||||   |||| ||||||||| |  |||||||||||||| ||||| ||||||| ||| |||||||| |||||||    
T  1267 ttttgcggtttggttcggtttaattcgattttgaaaaagtgatccgaaatccgattcgatcttagcggtgtttacaaaacaatatccaaa 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University