View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13832_low_1 (Length: 859)
Name: NF13832_low_1
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13832_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 2 - 396
Target Start/End: Complemental strand, 31693722 - 31693329
Alignment:
| Q |
2 |
attatagtagcgaaactactctatcgtttgtaaaaaatatcctggactaactgcaacattannnnnnnngtgagagattaaattatattcgcaaatggtg |
101 |
Q |
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| T |
31693722 |
attatagtagagaaactaatctatcgtttgtaaaaaatatcatggactaactgaaacattattttttt-gtgagagattaaattatattcgcaaatggtg |
31693624 |
T |
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| Q |
102 |
agagatcacaataannnnnnngtcttatttattattatatagtacaattgtttccatgcccctcatttgttgtccacactgcaaagtaataacttttgtg |
201 |
Q |
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| T |
31693623 |
agagatcaaaataatttttttgtcttatttattattatatagtacaattgtttcgatgcccctcatttgttgtccacactgcaaagtaataacttttctg |
31693524 |
T |
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| Q |
202 |
cagaaaagaagtgaaagctgcatacatgttttctaaggtttgaatgtgcttaatattttcttgttgagccttttgcatgcaactctacccacttgatcag |
301 |
Q |
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| T |
31693523 |
cagaaaagaagtgaaagctgcatacatgttttctaaggtttgaatgtgcttaatattttcttgttgagccttttgcatgcaactctatccacttgatcag |
31693424 |
T |
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| Q |
302 |
agacacaaacggttgtgtcaaaccttatacatgagagttacatcaaattggtttgttgattcaccttgacatctcttaacaaaattcatacatag |
396 |
Q |
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| T |
31693423 |
agacacaaacgattgtgtcaaaccttatacatgagagttacatcaaattggtatgttgattcaccttgatatctcttaacaaaattcatacatag |
31693329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 506 - 842
Target Start/End: Complemental strand, 31693255 - 31692922
Alignment:
| Q |
506 |
ggttgtgaatcaaaatgccaaactttcttagacatgcaatgaagtctaagagaggaaaagagagagttcaaggcaaagnnnnnnncttgaacaaaatgag |
605 |
Q |
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| T |
31693255 |
ggttgtgaatcaaaatgccaaactttcttaaacatgcaatgaagtctaagagaggaaaagagagagttcaaggcaaagaaaaaaacttgaacaaaatgag |
31693156 |
T |
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| Q |
606 |
gaaaattagaattttgtatagtgatcctaatgctacagattattcaagtnnnnnnnnnnnnnnnnncatgtttttgagaaatgagtataagtttgatggt |
705 |
Q |
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| T |
31693155 |
gaaaattagaattttgtatagtgatcctaatgctacagattattcaagtgaagaagaagaaga---catgtttttgagaaatgagtataagtttgatggt |
31693059 |
T |
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| Q |
706 |
tcaaagaggattgtggaggaattttttgttccatttatgcccttggctaatgagaataagaagaatgaatgtgaaagctcattgttagctttgaggaaaa |
805 |
Q |
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| T |
31693058 |
tcaaagaggattgtggaggaattttttgttccatttatgcccttggctaatgagaataagaagaatgaatgtgaaagctcattgttagctttgaggaaaa |
31692959 |
T |
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| Q |
806 |
gggaagatgtcaaagaagtgatattaatgtcagtact |
842 |
Q |
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| T |
31692958 |
gggaagatgtcaaagaagtgatattaatgtcagtact |
31692922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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