View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13832_low_10 (Length: 325)
Name: NF13832_low_10
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13832_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 10119573 - 10119869
Alignment:
| Q |
17 |
agatttgacatcctaatatagtcacaatgatgagacatttatttttgcgactagtaaatgatataaagtgacgtgcttacttcaggaaaagaattcaaaa |
116 |
Q |
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| T |
10119573 |
agatttgacatcctaatatagtcacaatgatgagacatttatttttgcgtctagtaaatgatataaagtgacgtgcttacttcaggaaaagaattcaaaa |
10119672 |
T |
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| Q |
117 |
ggagaaacaccaaagaagaaactcgctaatgattctgatgacgaaggaagcacagctctttcctcagacaatgaatcccatagagcacgaacctatcaaa |
216 |
Q |
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| T |
10119673 |
ggagaaacaccaaagaagaaactcgctgatgattctgatgacgaaggaagcacagctctttcctcagacaatgaatcccatagagcacgaacctatcaaa |
10119772 |
T |
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| Q |
217 |
ctccctctttcaatcaggtacgatagttttacatttaatcggttttattttctcatattatcactggagtctggtatctatatgttggtgttttcat |
313 |
Q |
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| T |
10119773 |
ctccctctttcaatcaggtacaatagttttacatttaatcggttttattttctcatattattactggagtctggtatctatacgttggtgttttcat |
10119869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 75 - 256
Target Start/End: Original strand, 10126885 - 10127069
Alignment:
| Q |
75 |
tgatataaagtgacgtgcttacttcaggaaaagaattcaaaaggagaaacaccaaagaagaaactcgctaatgattctgatgacgaaggaagcacagctc |
174 |
Q |
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|||||||| | || |||||| |||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || |
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| T |
10126885 |
tgatataaggcgatgtgcttctttcaggaaaagaatgcaaaaggagaaacactgaagaagaaactcgctgttgattctgatgacgaaggaagcagctctg |
10126984 |
T |
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| Q |
175 |
tttcctcagacaatga---atcccatagagcacgaacctatcaaactccctctttcaatcaggtacgatagttttacatttaatc |
256 |
Q |
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| T |
10126985 |
attcatcagacgatgaatcatcacacagagcactaacctatcgaactccctttttcaatcaggtacaatagttttacatttaatc |
10127069 |
T |
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