View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13832_low_2 (Length: 651)

Name: NF13832_low_2
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13832_low_2
NF13832_low_2
[»] chr3 (9 HSPs)
chr3 (2-557)||(47414953-47415507)
chr3 (2-195)||(47398309-47398502)
chr3 (56-194)||(46543041-46543179)
chr3 (7-90)||(5155299-5155382)
chr3 (2-50)||(46531348-46531396)
chr3 (5-75)||(46507118-46507188)
chr3 (304-369)||(18428572-18428637)
chr3 (2-94)||(4582493-4582585)
chr3 (2-78)||(46469733-46469809)
[»] chr8 (3 HSPs)
chr8 (43-194)||(21465975-21466126)
chr8 (2-93)||(9677631-9677722)
chr8 (6-93)||(9693376-9693463)
[»] chr4 (2 HSPs)
chr4 (4-93)||(15555098-15555187)
chr4 (3-96)||(35160544-35160637)
[»] chr7 (3 HSPs)
chr7 (110-194)||(16729332-16729416)
chr7 (110-194)||(17706404-17706488)
chr7 (110-194)||(17716392-17716476)
[»] chr2 (1 HSPs)
chr2 (34-78)||(20154467-20154511)


Alignment Details
Target: chr3 (Bit Score: 522; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 2 - 557
Target Start/End: Original strand, 47414953 - 47415507
Alignment:
Q  2 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  47414953 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatgatgagcacggagt 47415052  T
Q  102 ggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatggtt 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415053 ggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtcatggtt 47415152  T
Q  202 catatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggagaatga 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415153 catatctcttctattagttagagaatgagaatgtggttgcggccggtcccgtggcacaggagaacgagagcggttgtaagaaggaggtggaggagaatga 47415252  T
Q  302 tgttgcttgtcttgtggcagaggagagatgctgcggcagctctggtgagggcgaggggatggagaatggcgttccatgattatgagagtggttacagaat 401  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415253 tgttgcttgtcttgtggcagaggagagatgctgcggcggctctggtgagggcgaggggatggagaatggcgttccatgattatgagagtggttacagaat 47415352  T
Q  402 -gagagtcgggtgacagtgtatattaaggtgaaagatgacctaatattgactgaaggcaacaggatagttgaatgaatttgttgctatctatttcaattg 500  Q
     ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415353 cgagagtcgggtgacagtgtatattaaggtgaaagatgtcctaatattgactgaaggcaacaggatagttgaatgaatttgttgctatctatttcaattg 47415452  T
Q  501 caatatatataagaaaagttaacttgctaatcaagtcagtgccatcaaattatttac 557  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47415453 ca--atatataagaaaagttaacttgctaatcaagtcagtgccatcaaattatttac 47415507  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 2 - 195
Target Start/End: Original strand, 47398309 - 47398502
Alignment:
Q  2 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagt 101  Q
    |||||||||||||| ||| |||| || || || |||||||||||||||| ||| ||||||||||||||||||||||| ||  ||||||| ||||||| ||    
T  47398309 aaggagttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatgcttagcacggtgt 47398408  T
Q  102 ggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggtc 195  Q
    | |    ||| ||||||||||||||||||||||||||||  | ||||||||||| ||||||| ||||||||||||||||||||||| |||||||    
T  47398409 gtagcgtcaaaggcgaaaacacaacattcttttctttaaaattttgtttggagaacaaatggctggccatggtcatggaaaccttggttaggtc 47398502  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 46543179 - 46543041
Alignment:
Q  56 tgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagttcttgtttggaga 155  Q
    |||||||||||||||| ||| |||||||| |||||||||||   ||||| | |||| || ||||||||||| ||||||||||||| ||||| ||||||||    
T  46543179 tgtgtgggaccctcagcgccggccgcaattatgctgagcacaacgtggagtgacaaaggtgaaaacacaacgttcttttctttaaattcttctttggaga 46543080  T
Q  156 gcaaatggttggccatggtcatggaaaccttgattaggt 194  Q
     |||||| ||||| |||||||  |||| |||| ||||||    
T  46543079 acaaatgtttggcgatggtcacagaaaacttgtttaggt 46543041  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 5155382 - 5155299
Alignment:
Q  7 gttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgct 90  Q
    ||||||||| ||| ||||||| ||   ||||||||||||||||| ||| ||||||||||||||||||||||| || ||||||||    
T  5155382 gttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcagagccagcagcgatgatgct 5155299  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 46531396 - 46531348
Alignment:
Q  2 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagct 50  Q
    ||||||||||||||||||||||||||||| || ||||||  ||||||||    
T  46531396 aaggagttgagatgatcaatggattttgaaccaaggaaggagagaagct 46531348  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 46507118 - 46507188
Alignment:
Q  5 gagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagcc 75  Q
    |||||||||||||  || ||||| |||| ||||||||| |||| || ||| || |||||||||||||||||    
T  46507118 gagttgagatgatggatagatttggagcagaggaagtcaagaatctgttgttgagtgggaccctcagagcc 46507188  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 18428572 - 18428637
Alignment:
Q  304 ttgcttgtcttgtggcagaggagagatgctgcggcagctctggtgagggcgaggggatggagaatg 369  Q
    |||||||||| | ||| |||| ||||||||||||  |||| ||||| |||||| ||||||||||||    
T  18428572 ttgcttgtctcgcggcggaggtgagatgctgcggtggctccggtgacggcgagtggatggagaatg 18428637  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 4582493 - 4582585
Alignment:
Q  2 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagc 94  Q
    |||||||||||||||||| | ||||| |||   |||||||||||||||| ||    |||||| || ||||||||||| || || |||||||||    
T  4582493 aaggagttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagc 4582585  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 46469809 - 46469733
Alignment:
Q  2 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagc 78  Q
    |||||||||||||| || |||||||| || | |||||| |||||||| | ||| |||||  ||||||||||| ||||    
T  46469809 aaggagttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagc 46469733  T

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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 43 - 194
Target Start/End: Original strand, 21465975 - 21466126
Alignment:
Q  43 gagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcacggagtggattaacaatggcgaaaacacaacattcttttctttaagt 142  Q
    |||||| | ||| ||||| ||||| ||||||||||| || |||||||| | |||   ||||| | | ||||||||||||||||||||  |||||||   |    
T  21465975 gagaagttgttgttgtgtcggaccttcagagccagcagcgatgatgctcaacacaatgtggagtgataatggcgaaaacacaacattggtttctttgtat 21466074  T
Q  143 tcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 194  Q
    ||||||||||||| |||||| ||||| |||||||  ||||||||| ||||||    
T  21466075 tcttgtttggagaacaaatgtttggcaatggtcaaagaaaccttggttaggt 21466126  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 9677631 - 9677722
Alignment:
Q  2 aaggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag 93  Q
    ||||||||||||||||| ||||||||  | | ||||||||||||||||| ||| || || ||||||||||||||||| || ||||| |||||    
T  9677631 aaggagttgagatgatcgatggatttgaaacggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgag 9677722  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 9693376 - 9693463
Alignment:
Q  6 agttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag 93  Q
    ||||||||||||| ||||||||  | | ||||||||| ||||||| ||| || || ||||| ||||||||| | || |||||||||||    
T  9693376 agttgagatgatcgatggatttgaaacggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgag 9693463  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 15555187 - 15555098
Alignment:
Q  4 ggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgag 93  Q
    ||||||||| ||||  ||||||||  ||| ||||||||||||||| | ||| ||||||| ||||||||||||||| || |||||||||||    
T  15555187 ggagttgagttgatggatggatttaaagcggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgag 15555098  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 96
Target Start/End: Complemental strand, 35160637 - 35160544
Alignment:
Q  3 aggagttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtgggaccctcagagccagccgcaatgatgctgagcac 96  Q
    ||||||||||||||||| |||||||  | | ||||||||| ||||||| ||| ||||| | ||||||||||||||| |  || |||||||||||    
T  35160637 aggagttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcac 35160544  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 16729416 - 16729332
Alignment:
Q  110 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 194  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  16729416 aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 16729332  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 17706488 - 17706404
Alignment:
Q  110 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 194  Q
    ||||| ||||||||||| ||||||||||| |||||||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17706488 aatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17706404  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 17716476 - 17716392
Alignment:
Q  110 aatggcgaaaacacaacattcttttctttaagttcttgtttggagagcaaatggttggccatggtcatggaaaccttgattaggt 194  Q
    ||||| ||||||||||||||||||||||| |||| ||| ||||| | ||| || ||||  ||| |||||||||| ||| ||||||    
T  17716476 aatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgttcatggaaacgttggttaggt 17716392  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 20154511 - 20154467
Alignment:
Q  34 gaggaagtcgagaagcttttgatgtgtgggaccctcagagccagc 78  Q
    ||||||||||| ||||| ||| ||||||||||| |||||||||||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagc 20154467  T

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