View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13832_low_3 (Length: 618)
Name: NF13832_low_3
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13832_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 8e-75; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 82 - 297
Target Start/End: Original strand, 31855646 - 31855852
Alignment:
| Q |
82 |
aatggaagaaaataaatatcaccaacccttttaattttgtgtttacatacacaatacatatcatttttacagtaaattaaaaatgatatttaccttgcgg |
181 |
Q |
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| T |
31855646 |
aatggaagaaaataaatatcaccaacccttttaattttgtgtttacata----atacatataatttttacacaaaa-----aatattatttaccttgtga |
31855736 |
T |
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| Q |
182 |
actcaatggagaagcattaattggcggaagagacgggacatttgatccaaatatagctggacctgccaacaaaagcaaaaatttatgacgttatatatcc |
281 |
Q |
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| T |
31855737 |
actcaagggagaagcattgattggcggaagagacgggacatttgatccaaatatagctggacctgccaacaaaagcaaaaatttatgacgttatatatcc |
31855836 |
T |
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| Q |
282 |
atgtgtcgttatatat |
297 |
Q |
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| T |
31855837 |
atgtgtcgttatatat |
31855852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 443 - 607
Target Start/End: Original strand, 31856129 - 31856293
Alignment:
| Q |
443 |
ttaattaataaatacctggagctggtaaaggagagccggaggctgcaatttacaaattaataaaaacattcattagacatattatatacaaataattttc |
542 |
Q |
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| T |
31856129 |
ttaattaataaatacctggagctggtaaaggagaaccagaagctgcaatgtacaaatttataaaaacctttattagacatattatatacaaatgatttta |
31856228 |
T |
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| Q |
543 |
ataggaattagaagattaggaagaaaattcatcacataatttgtcacaaaaggaaaaatatatga |
607 |
Q |
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| T |
31856229 |
aaggaaactaaaataggaagaaaataattcatcacataatttgtcacaaaaggaaaaatatatga |
31856293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 312 - 445
Target Start/End: Original strand, 31855930 - 31856059
Alignment:
| Q |
312 |
gattggatcgtattgttcttgcaaataaaatgtttaaaaataatcttttaaatgtaactcggttagtagctccatggacattagtatgagtatataatta |
411 |
Q |
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| T |
31855930 |
gattggatcgtactgttcttgcaaataaaatgtttaaaaataatcttttaaatgcaactcgattaatagcttcatggacattagtattagtata----tg |
31856025 |
T |
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| Q |
412 |
atgagttgaagttcgaatattagatttcttatta |
445 |
Q |
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| T |
31856026 |
atgagttgaagttcgaatctcatatttcttatta |
31856059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 31855515 - 31855584
Alignment:
| Q |
17 |
agttttgtaggtgctggtgccattgctgagtgttgaattacatatttaggagaatcagctacttcaatgg |
86 |
Q |
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| T |
31855515 |
agttttgtcggtgctggtgcaattgctgagtgttgaattacatatttaggagaatcagctacctcaatgg |
31855584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 157 - 255
Target Start/End: Original strand, 31865222 - 31865320
Alignment:
| Q |
157 |
attaaaaatgatatttaccttgcggactcaatggagaagcattaattggcggaagagacgggacatttgatccaaatatagctggacctgccaacaaaa |
255 |
Q |
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| T |
31865222 |
attaacaatgatatttaccttgcaggtttaagggaaaaccattaattagggtaagagacgggacatttgattcaaggatagctgggcctgccaacaaaa |
31865320 |
T |
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