View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13832_low_4 (Length: 557)

Name: NF13832_low_4
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13832_low_4
NF13832_low_4
[»] chr3 (79 HSPs)
chr3 (13-309)||(28149205-28149502)
chr3 (364-541)||(28148999-28149176)
chr3 (327-540)||(28184867-28185080)
chr3 (323-520)||(28082825-28083022)
chr3 (398-528)||(28134715-28134845)
chr3 (367-533)||(28480584-28480750)
chr3 (367-533)||(28509767-28509933)
chr3 (184-305)||(27919794-27919915)
chr3 (326-445)||(28054571-28054690)
chr3 (326-445)||(28064996-28065115)
chr3 (184-309)||(8539625-8539750)
chr3 (180-309)||(17744983-17745112)
chr3 (180-309)||(19046303-19046432)
chr3 (173-305)||(28036886-28037018)
chr3 (172-299)||(28083061-28083188)
chr3 (172-309)||(28185241-28185378)
chr3 (357-501)||(27979596-27979740)
chr3 (207-309)||(28161399-28161501)
chr3 (172-309)||(28135423-28135560)
chr3 (207-299)||(27979930-27980022)
chr3 (153-305)||(28003642-28003794)
chr3 (327-427)||(28161138-28161238)
chr3 (419-540)||(28160315-28160436)
chr3 (357-501)||(28151056-28151200)
chr3 (362-501)||(11420153-11420292)
chr3 (357-487)||(28003328-28003458)
chr3 (173-282)||(18079134-18079243)
chr3 (173-309)||(18077048-18077184)
chr3 (207-290)||(28005300-28005383)
chr3 (357-455)||(27919514-27919612)
chr3 (173-305)||(27459363-27459496)
chr3 (230-297)||(27390661-27390728)
chr3 (179-281)||(26127958-26128060)
chr3 (179-281)||(26178008-26178110)
chr3 (179-309)||(26629103-26629233)
chr3 (243-305)||(28054969-28055031)
chr3 (243-305)||(28065394-28065456)
chr3 (357-448)||(28036610-28036701)
chr3 (179-289)||(11420527-11420637)
chr3 (357-447)||(17745307-17745397)
chr3 (357-447)||(19046627-19046717)
chr3 (207-309)||(27379376-27379478)
chr3 (173-291)||(28084514-28084632)
chr3 (374-434)||(28507044-28507104)
chr3 (370-460)||(26114053-26114143)
chr3 (208-289)||(26630806-26630887)
chr3 (182-281)||(26139907-26140006)
chr3 (179-277)||(26110964-26111062)
chr3 (179-277)||(26233310-26233408)
chr3 (174-250)||(28055905-28055981)
chr3 (174-250)||(28066330-28066406)
chr3 (211-299)||(12147176-12147267)
chr3 (106-177)||(27249877-27249948)
chr3 (187-309)||(28506894-28507017)
chr3 (245-291)||(27350056-27350102)
chr3 (93-154)||(27919936-27919997)
chr3 (79-175)||(27459242-27459338)
chr3 (211-299)||(27348381-27348472)
chr3 (211-299)||(27377721-27377812)
chr3 (232-291)||(27389193-27389252)
chr3 (330-457)||(27459684-27459810)
chr3 (179-230)||(28151344-28151395)
chr3 (179-281)||(26113453-26113558)
chr3 (179-277)||(26205247-26205345)
chr3 (208-281)||(26235777-26235851)
chr3 (460-529)||(26178724-26178793)
chr3 (323-372)||(28135212-28135261)
chr3 (122-177)||(17744898-17744953)
chr3 (207-250)||(18025075-18025118)
chr3 (122-177)||(19046218-19046273)
chr3 (470-529)||(26128685-26128744)
chr3 (370-440)||(26128809-26128879)
chr3 (263-309)||(28151284-28151330)
chr3 (182-219)||(27249808-27249845)
chr3 (120-177)||(28037041-28037098)
chr3 (120-164)||(18024979-18025023)
chr3 (334-398)||(18025327-18025391)
chr3 (182-242)||(26129265-26129325)
chr3 (182-242)||(26179321-26179381)
[»] chr7 (2 HSPs)
chr7 (357-539)||(8692895-8693077)
chr7 (211-309)||(8692618-8692716)
[»] scaffold0257 (3 HSPs)
scaffold0257 (364-514)||(18446-18596)
scaffold0257 (207-311)||(18624-18728)
scaffold0257 (99-170)||(18735-18806)
[»] scaffold0043 (2 HSPs)
scaffold0043 (207-291)||(51950-52034)
scaffold0043 (211-290)||(53670-53752)
[»] scaffold1142 (1 HSPs)
scaffold1142 (207-309)||(1503-1605)
[»] chr2 (2 HSPs)
chr2 (207-291)||(22394372-22394456)
chr2 (211-299)||(22392650-22392741)
[»] scaffold1163 (1 HSPs)
scaffold1163 (207-272)||(1-66)
[»] chr4 (2 HSPs)
chr4 (207-246)||(9328789-9328828)
chr4 (207-246)||(9382566-9382605)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-138; HSPs: 79)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 28149502 - 28149205
Alignment:
Q  13 attcttacaaatc-aattccatggcaattaaattataacaaaaagaaaaatatgacagaaatacctataagcagaagactatgttagtttgaaggctttg 111  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||    
T  28149502 attcttacaaatccaattccattgcaattaaataataacaaaaagaaaaatatgacagcaatacctacaaacagaagactatgttaatttgaaggctttg 28149403  T
Q  112 ttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatgttgttattgtcttggcattagctgtcgtggttcc 211  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28149402 ttatatataataaactcacctgtgaagatgttttatgcttagaagtagataatggacctaatgatgttgttattgtcttggcattagctgacgtggttcc 28149303  T
Q  212 ttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaagaat 309  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28149302 ttcttcagcacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttcaaaagaat 28149205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 364 - 541
Target Start/End: Complemental strand, 28149176 - 28148999
Alignment:
Q  364 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtcca 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28149176 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggcagtatcagtttctccaagtgaacgttgttggtcca 28149077  T
Q  464 ttgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaaat 541  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28149076 ttgatcgttcattcatcaactcctgtaacaagaacataggcattaatgatcttcagctattaattgcatcaattaaat 28148999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 327 - 540
Target Start/End: Complemental strand, 28185080 - 28184867
Alignment:
Q  327 cacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacg 426  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  28185080 cacttgaaataaaatatatttctttcggtatttcatttttagctttatatgcacaacgcggtggtacgacattacatgatttacctgagaaggtttgacg 28184981  T
Q  427 gaagtatcagtttctccaagtgaacgttgttggtccattgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaa 526  Q
    | |||||||| ||||||||||  |||||| || ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  28184980 gtagtatcaggttctccaagtagacgttgctgctccattgattgttcattcatcaactcctgtaacaagaacagaagcaataatgatcttcagctattaa 28184881  T
Q  527 ttgcatcaattaaa 540  Q
    || |||| ||||||    
T  28184880 ttacatccattaaa 28184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 323 - 520
Target Start/End: Complemental strand, 28083022 - 28082825
Alignment:
Q  323 gaagcacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggttt 422  Q
    |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||   ||||| |||||| |||||||||||||| |||||||    
T  28083022 gaagcagttgaaataaaatatatttctttcagtatttcatttttagctttatatgcacaatgtattggtatgatattgcatgatttacctgaaaaggttt 28082923  T
Q  423 gacggaagtatcagtttctccaagtgaacgttgttggtccattgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagc 520  Q
    ||||| ||||||||||||||||| |  ||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  28082922 gacggcagtatcagtttctccaactagacgttgttggtccattgtttgttcattcatcaactcctgttacaagaacagaagcattaacgatcttcagc 28082825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 398 - 528
Target Start/End: Complemental strand, 28134845 - 28134715
Alignment:
Q  398 ttacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtccattgatcgttcattcatcaactcctgtaacaagaa 497  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28134845 ttacacgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtccattgattgttcattcatcaactcctgtaacaagaa 28134746  T
Q  498 cataagcattaatgatcttcagctattaatt 528  Q
    ||||||||||||||||||| |||||||||||    
T  28134745 cataagcattaatgatcttaagctattaatt 28134715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 367 - 533
Target Start/End: Original strand, 28480584 - 28480750
Alignment:
Q  367 agctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtccattg 466  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||  ||||||||| ||||| |    
T  28480584 agctttttatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacgggagtatcggcttctccaagtagacgttgttgctccatag 28480683  T
Q  467 atcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatc 533  Q
    || ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  28480684 attgttgattcatcaactcctgtaacaagcacataagcattaattatcttcagctattaattacatc 28480750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 367 - 533
Target Start/End: Original strand, 28509767 - 28509933
Alignment:
Q  367 agctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtccattg 466  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| | ||||||||||  ||||||||| ||||| |    
T  28509767 agctttatatgcacaatgcggtggtacgatattacttgatttacctgagaaggtttgacggcagaatcggcttctccaagtagacgttgttgctccatcg 28509866  T
Q  467 atcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatc 533  Q
    || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  28509867 attgttcattcatcaactcctgtaacaagcacataagcattaattatcttcagctattaattacatc 28509933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 27919915 - 27919794
Alignment:
Q  184 ttgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcc 283  Q
    ||||||||||||||||||  ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27919915 ttgtcttggcattagctgatgtgattccttcttcaacacatattttgataccctgcttaaaattaaatggatgttgaagattgtagtataattcaattcc 27919816  T
Q  284 tgcattgacaaagtgttaaaaa 305  Q
    | |||||| |||||||||||||    
T  27919815 tacattgaaaaagtgttaaaaa 27919794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 326 - 445
Target Start/End: Complemental strand, 28054690 - 28054571
Alignment:
Q  326 gcacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgac 425  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||    
T  28054690 gcacttgaaataaaatatatttctttaagtatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgac 28054591  T
Q  426 ggaagtatcagtttctccaa 445  Q
    || ||||||| |||||||||    
T  28054590 ggcagtatcaatttctccaa 28054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 326 - 445
Target Start/End: Complemental strand, 28065115 - 28064996
Alignment:
Q  326 gcacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgac 425  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||    
T  28065115 gcacttgaaataaaatatatttctttaagtatttcatttttatctttatatgcacgatgcagtggtacaataatacatgatttacctgagaaggtttgac 28065016  T
Q  426 ggaagtatcagtttctccaa 445  Q
    || ||||||| |||||||||    
T  28065015 ggcagtatcaatttctccaa 28064996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 8539625 - 8539750
Alignment:
Q  184 ttgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcc 283  Q
    |||| |||||||||||||  || ||||||||||||||||||||||| | |||||||||||||||||||  ||||||| ||||||||||||||||||||||    
T  8539625 ttgtattggcattagctgatgtagttccttcttcaacacttatttcaacaccctgcttaaaattaaattaatgtttaggattgtagtataattcaattcc 8539724  T
Q  284 tgcattgacaaagtgttaaaaagaat 309  Q
    |||||||  |||||||||||||||||    
T  8539725 tgcattggaaaagtgttaaaaagaat 8539750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 17744983 - 17745112
Alignment:
Q  180 gttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaa 279  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||| ||||||||    
T  17744983 gttattctcttggcattagctgatgtggttccttcttcaacacttatttcgttaccctgcttataattaaacagatgtttaagattgtagtttaattcaa 17745082  T
Q  280 ttcctgcattgacaaagtgttaaaaagaat 309  Q
    |||||  |||||||||| || |||||||||    
T  17745083 ttcctttattgacaaagagtgaaaaagaat 17745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 19046303 - 19046432
Alignment:
Q  180 gttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaa 279  Q
    |||||| |||||||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||||||||||| ||||||||    
T  19046303 gttattctcttggcattagctgatgtggttccttcttcaacacttatttcgttaccctgcttataattaaacagatgtttaagattgtagtttaattcaa 19046402  T
Q  280 ttcctgcattgacaaagtgttaaaaagaat 309  Q
    |||||  |||||||||| || |||||||||    
T  19046403 ttcctttattgacaaagagtgaaaaagaat 19046432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 173 - 305
Target Start/End: Complemental strand, 28037018 - 28036886
Alignment:
Q  173 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 272  Q
    ||||| ||||||||| ||| || ||||||  || |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28037018 tgatgatgttattgtattgtcagtagctgatgttgttccttctaaaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 28036919  T
Q  273 aattcaattcctgcattgacaaagtgttaaaaa 305  Q
    |||||||||||| |||||| || |||| |||||    
T  28036918 aattcaattcctacattgaaaaggtgtcaaaaa 28036886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 28083188 - 28083061
Alignment:
Q  172 atgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagta 271  Q
    |||||| |||| || |||||||||||||||  || |||||||||||||||||||||||  || |||||||||||||| |  |||||||||||||||||||    
T  28083188 atgatgctgttgttctcttggcattagctgatgtagttccttcttcaacacttatttcactaacctgcttaaaattagaaagatgtttaagattgtagta 28083089  T
Q  272 taattcaattcctgcattgacaaagtgt 299  Q
    ||||||||||||||||||||||||||||    
T  28083088 taattcaattcctgcattgacaaagtgt 28083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 28185378 - 28185241
Alignment:
Q  172 atgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagta 271  Q
    ||||||| ||| || |||||||||||| ||  || |||||||||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||    
T  28185378 atgatgtcgttcttctcttggcattagatgaagtagttccttcttgaacacttatttcgctaacctgcttaaaattaaaaagatgtttaagattgtagta 28185279  T
Q  272 taattcaattcctgcattgacaaagtgttaaaaagaat 309  Q
    ||| ||||||||||||| |||||||||| |||||||||    
T  28185278 taagtcaattcctgcatagacaaagtgtcaaaaagaat 28185241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 357 - 501
Target Start/End: Complemental strand, 27979740 - 27979596
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgt 456  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||| |||| |  ||||||||||||||| || ||||||||||||||||| |||||||    
T  27979740 tttcttttttagctttatattcacaatgaggtggtactatattacattattttctggagaaggtttgacggtagcatcagtttctccaagtggacgttgt 27979641  T
Q  457 tggtccattgatcgttcattcatcaactcctgtaacaagaacata 501  Q
    || ||||||  | |||||| ||||||||||||||| |||||||||    
T  27979640 tgctccatttgttgttcatccatcaactcctgtaataagaacata 27979596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 28161501 - 28161399
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 306  Q
    |||||||||||||||||||||||| || ||||||||||||||||  |||||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  28161501 gttccttcttcaacacttatttcgctaacctgcttaaaattaaaaagatgtttaagattgtagtataagtcaattcctgcatagacaaagtgtcaaaaag 28161402  T
Q  307 aat 309  Q
    |||    
T  28161401 aat 28161399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 172 - 309
Target Start/End: Complemental strand, 28135560 - 28135423
Alignment:
Q  172 atgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagta 271  Q
    |||||| |||| || |||||||||||||||  || |||||||||||||||||||||||  || ||||||||||||| ||  ||| |||||||||||||||    
T  28135560 atgatgctgttgttctcttggcattagctgatgtagttccttcttcaacacttatttcactaacctgcttaaaatttaaaagatttttaagattgtagta 28135461  T
Q  272 taattcaattcctgcattgacaaagtgttaaaaagaat 309  Q
    |||||||| ||||||||||||||||||| |||| ||||    
T  28135460 taattcaactcctgcattgacaaagtgtcaaaatgaat 28135423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 207 - 299
Target Start/End: Complemental strand, 27980022 - 27979930
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgt 299  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||| |||||||    
T  27980022 gttccttcttcaacacttatctcgataccctgcttaaaattaaaaggatgtttgagattgtagtataactcaattcctgcattgaaaaagtgt 27979930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 28003794 - 28003642
Alignment:
Q  153 gaagtagataatggacctaatgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatg 252  Q
    |||||||||||  | |||  ||||| | |||||||||||||||||||||  ||| |||| |||||||||||| |||| ||||||||||||||||||||||    
T  28003794 gaagtagataaatggcctggtgatgattttattgtcttggcattagctgatgtgattccatcttcaacacttttttcaataccctgcttaaaattaaatg 28003695  T
Q  253 gatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 305  Q
    |||||||||| |  | |||||||||||||||| |||||| ||||||| |||||    
T  28003694 gatgtttaagttgatggtataattcaattcctacattgaaaaagtgtcaaaaa 28003642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 327 - 427
Target Start/End: Complemental strand, 28161238 - 28161138
Alignment:
Q  327 cacttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacg 426  Q
    ||||||||||||||||| |||| ||  ||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||    
T  28161238 cacttgaaataaaatatgtttctttcggtatttcatttttagctttatatgcacaacgcggtgttacgacattacatgatttacctgagaaggtttgacg 28161139  T
Q  427 g 427  Q
    |    
T  28161138 g 28161138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 419 - 540
Target Start/End: Complemental strand, 28160436 - 28160315
Alignment:
Q  419 gtttgacggaagtatcagtttctccaagtgaacgttgttggtccattgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttca 518  Q
    |||||| || |||||||| ||||||||||  |||||| || ||||| ||| |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  28160436 gtttgatggtagtatcaggttctccaagtagacgttgctgttccatcgattgttcattcatcaactcctgtaacaagaacagaagcaataatgatcttca 28160337  T
Q  519 gctattaattgcatcaattaaa 540  Q
    |||||||||| |||| ||||||    
T  28160336 gctattaattacatccattaaa 28160315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 357 - 501
Target Start/End: Complemental strand, 28151200 - 28151056
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgt 456  Q
    |||| ||||||| ||||||||||||||| |||||||| ||||||||| |||| | |||||||||||||||| || |||| |||||||| ||  ||||| |    
T  28151200 tttcttttttagatttatatgcacaatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcaatttctccacgtagacgtttt 28151101  T
Q  457 tggtccattgatcgttcattcatcaactcctgtaacaagaacata 501  Q
    || ||||||  | |||||||||||||||||||||  |||||||||    
T  28151100 tgctccatttcttgttcattcatcaactcctgtagtaagaacata 28151056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 362 - 501
Target Start/End: Complemental strand, 11420292 - 11420153
Alignment:
Q  362 tttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtc 461  Q
    ||||||| ||||||||||||||| | |||||| |||||||   |||| ||||  |||||||||||| || ||||||||| ||||||| ||||||||| ||    
T  11420292 tttttagttttatatgcacaatgagatggtactatattactgtattttcctgcaaaggtttgacggtagcatcagtttcaccaagtggacgttgttgctc 11420193  T
Q  462 cattgatcgttcattcatcaactcctgtaacaagaacata 501  Q
    ||||| | |||||||||||||||||||||| | |||||||    
T  11420192 cattggttgttcattcatcaactcctgtaatatgaacata 11420153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 357 - 487
Target Start/End: Complemental strand, 28003458 - 28003328
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgt 456  Q
    |||| ||||||| ||||||||||| ||| |||||||| ||||||||| |||| | |||||||||||||||| || ||||||||||||||||  ||||| |    
T  28003458 tttcttttttagatttatatgcacgatgaggtggtactatattacattattttcttgagaaggtttgacggtagcatcagtttctccaagtagacgtttt 28003359  T
Q  457 tggtccattgatcgttcattcatcaactcct 487  Q
    || ||||||  | ||||||||||||||||||    
T  28003358 tgctccatttcttgttcattcatcaactcct 28003328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 18079134 - 18079243
Alignment:
Q  173 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 272  Q
    ||||| ||||||||||||||||||||| |  |  ||||||| |||||||||||||||| || |||||||||||||| | |||||||||||| ||||||||    
T  18079134 tgatgatgttattgtcttggcattagccgatgaagttcctttttcaacacttatttcgttaacctgcttaaaattagaaggatgtttaagactgtagtat 18079233  T
Q  273 aattcaattc 282  Q
    ||||||||||    
T  18079234 aattcaattc 18079243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 173 - 309
Target Start/End: Original strand, 18077048 - 18077184
Alignment:
Q  173 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 272  Q
    ||||| ||||||||||||||||||||| |  |  | ||| | |||||||||||||||| |  |||||||||||| ||| |||||||||||||||||||||    
T  18077048 tgatgatgttattgtcttggcattagccgatgacggtcccttttcaacacttatttcgttgacctgcttaaaataaaaaggatgtttaagattgtagtat 18077147  T
Q  273 aattcaattcctgcattgacaaagtgttaaaaagaat 309  Q
    |||||||||| ||| |||| |||| || |||||||||    
T  18077148 aattcaattcttgctttgaaaaagagtcaaaaagaat 18077184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 290
Target Start/End: Complemental strand, 28005383 - 28005300
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattg 290  Q
    |||||||||||||||||| | ||||||||||||||||||||| | |||||||| |||||||||||||||||||||||| |||||    
T  28005383 gttccttcttcaacacttttctcgataccctgcttaaaattagaaggatgtttgagattgtagtataattcaattcctacattg 28005300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 357 - 455
Target Start/End: Complemental strand, 27919612 - 27919514
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttg 455  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||| |||| | |||||||||||||||| ||||||| |||||||||||| ||||||    
T  27919612 tttcttttttagctttatattcacaatgaggtggtactatattacattattttcttgagaaggtttgacggtagtatcaatttctccaagtggacgttg 27919514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 27459363 - 27459496
Alignment:
Q  173 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaat-taaatggatgtttaagattgtagta 271  Q
    ||||| ||||||| |||||||||||||||  ||||||||||||||||| | || |||||| |||||||||||||  ||||||| ||||||||||||||||    
T  27459363 tgatggtgttattatcttggcattagctgatgtggttccttcttcaactcgtaattcgatgccctgcttaaaataaaaatggaagtttaagattgtagta 27459462  T
Q  272 taattcaattcctgcattgacaaagtgttaaaaa 305  Q
     || ||||||| | |||||| |||| || |||||    
T  27459463 caagtcaattctttcattgaaaaagagtaaaaaa 27459496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 27390661 - 27390728
Alignment:
Q  230 gataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagt 297  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||    
T  27390661 gataccctgcttaaaattaaaaggatgtttaagattgtagtataatttaattcctgcattgaaaaagt 27390728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 26127958 - 26128060
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 278  Q
    ||||||||||||||||||| |||  |  ||||||||||||||| |||||| |||||||||||||||  ||||  ||||||||||||||||| ||||||||    
T  26127958 tgttattgtcttggcattatctgatgcagttccttcttcaacatttatttggataccctgcttaaatgtaaaatgatgtttaagattgtaggataattca 26128057  T
Q  279 att 281  Q
    |||    
T  26128058 att 26128060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 26178008 - 26178110
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 278  Q
    ||||||||||||||||||| |||  |  ||||||||||||||| |||||| |||||||||||||||  ||||  ||||||||||||||||| ||||||||    
T  26178008 tgttattgtcttggcattatctgatgcagttccttcttcaacatttatttggataccctgcttaaatgtaaaatgatgtttaagattgtaggataattca 26178107  T
Q  279 att 281  Q
    |||    
T  26178108 att 26178110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 26629233 - 26629103
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 278  Q
    |||||||| ||||||||||||||  ||| ||||||||||||| ||||| ||||||||||||||||| ||||| |||| ||| || | || ||||| ||||    
T  26629233 tgttattggcttggcattagctgatgtgtttccttcttcaacgcttatctcgataccctgcttaaatttaaaaggatatttgagttggttgtatagttca 26629134  T
Q  279 attcctgcattgacaaagtgttaaaaagaat 309  Q
    | | ||||||||| ||||||| |||| ||||    
T  26629133 agttctgcattgaaaaagtgtcaaaacgaat 26629103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 28055031 - 28054969
Alignment:
Q  243 aaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 305  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28055031 aaattaaaaagatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 28054969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 28065456 - 28065394
Alignment:
Q  243 aaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 305  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28065456 aaattaaaaagatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaa 28065394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 357 - 448
Target Start/End: Complemental strand, 28036701 - 28036610
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtg 448  Q
    |||||||||||||||||||||||||||| |||||||| ||||||| | |||| |  |||||| |||||||| || |||||||||||||||||    
T  28036701 tttcatttttagctttatatgcacaatgaggtggtactatattacgttattttctggagaagctttgacggtagcatcagtttctccaagtg 28036610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 11420637 - 11420527
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattca 278  Q
    ||||||||| ||||||||||| |  | |||||||||||| ||||||||||  |||||||||||||||||||||| ||||||||| |  | |||||||| |    
T  11420637 tgttattgttttggcattagccgatgaggttccttcttcgacacttattttaataccctgcttaaaattaaatgcatgtttaagttgatggtataattaa 11420538  T
Q  279 attcctgcatt 289  Q
    ||| |||||||    
T  11420537 atttctgcatt 11420527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 357 - 447
Target Start/End: Original strand, 17745307 - 17745397
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagt 447  Q
    ||||||||||||  ||||||  |||||| |||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||||||||    
T  17745307 tttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctccaagt 17745397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 357 - 447
Target Start/End: Original strand, 19046627 - 19046717
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagt 447  Q
    ||||||||||||  ||||||  |||||| |||||||| ||||||||| |||| |||||||||||||||||| || ||||||||||||||||    
T  19046627 tttcatttttagtcttatataaacaatgaggtggtactatattacattattttcctgagaaggtttgacggtagcatcagtttctccaagt 19046717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 27379478 - 27379376
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 306  Q
    ||||||||||||  |||||| ||  ||||||||| || |||||| |||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||    
T  27379478 gttccttcttcagaacttatctcattaccctgctaaatattaaaaggatgtttaagattgtagtataattcaattactgcattgaaaatgtgtcaaacag 27379379  T
Q  307 aat 309  Q
    |||    
T  27379378 aat 27379376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 173 - 291
Target Start/End: Complemental strand, 28084632 - 28084514
Alignment:
Q  173 tgatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 272  Q
    ||||| ||||||||| ||| ||| || ||  || ||||||||||||| |||||| |  |||||||||| || |||||| ||||| |||||||||||||||    
T  28084632 tgatgatgttattgttttgtcataagttgatgtagttccttcttcaaaacttatcttcataccctgctaaatattaaaaggatgcttaagattgtagtat 28084533  T
Q  273 aattcaattcctgcattga 291  Q
     ||||||||||||||||||    
T  28084532 gattcaattcctgcattga 28084514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 28507044 - 28507104
Alignment:
Q  374 tatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatc 434  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  28507044 tatgcacaatgtggtggtacgatattacatgatttaccggagaaggtttgacggcagtatc 28507104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 460
Target Start/End: Original strand, 26114053 - 26114143
Alignment:
Q  370 tttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggt 460  Q
    ||||||||||||||| | |||||| ||||||||| || | | ||||||||||||| || |||||||||||||||||||| | |||||||||    
T  26114053 tttatatgcacaatgagatggtactatattacattatcttcttgagaaggtttgatggtagtatcagtttctccaagtggatgttgttggt 26114143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 208 - 289
Target Start/End: Complemental strand, 26630887 - 26630806
Alignment:
Q  208 ttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcatt 289  Q
    ||||||||||||||||||| |||||| |||||||||||||| | ||||  ||| | ||||| ||||||||||||||||||||    
T  26630887 ttccttcttcaacacttatctcgataacctgcttaaaattataaggatacttaggtttgtaatataattcaattcctgcatt 26630806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 26139907 - 26140006
Alignment:
Q  182 tattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaatt 281  Q
    |||||||||||||||| |||  ||  |||||||||||||| |||| | ||||||||||||| |  ||||  |||||||||||||||||||||||| ||||    
T  26139907 tattgtcttggcattaactgatgtatttccttcttcaacatttatctggataccctgcttatatgtaaaacgatgtttaagattgtagtataattaaatt 26140006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 26110964 - 26111062
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattc 277  Q
    ||||||| |||||||||||||||  ||  |||||||||||||  |||| |||||||||||||||||  ||||  |||| || |||||||||||||||||    
T  26110964 tgttattttcttggcattagctgatgtatttccttcttcaacgtttatctcgataccctgcttaaatgtaaaacgatgctttagattgtagtataattc 26111062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 26233310 - 26233408
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattc 277  Q
    ||||||| |||||||||||||||  ||  |||||||||||||  |||| |||||||||||||||||  ||||  |||| || |||||||||||||||||    
T  26233310 tgttattttcttggcattagctgatgtatttccttcttcaacgtttatctcgataccctgcttaaatgtaaaatgatgctttagattgtagtataattc 26233408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 28055981 - 28055905
Alignment:
Q  174 gatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaa 250  Q
    ||||| ||| || |||||||||||| ||| || |||||||||| ||||||||||||| || ||||||||||||||||    
T  28055981 gatgtcgttcttctcttggcattagatgttgtagttccttcttgaacacttatttcgctaacctgcttaaaattaaa 28055905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 28066406 - 28066330
Alignment:
Q  174 gatgttgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaa 250  Q
    ||||| ||| || |||||||||||| ||| || |||||||||| ||||||||||||| || ||||||||||||||||    
T  28066406 gatgtcgttcttctcttggcattagatgttgtagttccttcttgaacacttatttcgctaacctgcttaaaattaaa 28066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 12147267 - 12147176
Alignment:
Q  211 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 299  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||| || ||||||    |||||| ||||||||||||||  |||||||    
T  12147267 cttcttcaacagttatctcgataccctgcttaaaattaaa-ggatgtttcagtttgtagtatatataatacaattcctgcattggaaaagtgt 12147176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 177
Target Start/End: Complemental strand, 27249948 - 27249877
Alignment:
Q  106 gctttgttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 177  Q
    ||||||||| ||  |||||||| |||||||||| |||||||||||||||||||  |||| ||||||||||||    
T  27249948 gctttgttacatgaaataaactcacctgtgaagttgttttatgcttagaagtatctaattgacctaatgatg 27249877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 28506894 - 28507017
Alignment:
Q  187 tcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgt-agtataattcaattcctg 285  Q
    |||||||||||||||  || |  |||| ||| |||||||||||  || |||||||||||||| | |||||||||| | | | |||||||||||| |||||    
T  28506894 tcttggcattagctgatgtagcacctttttcgacacttatttcactaacctgcttaaaattacaaggatgtttaaaaatattagtataattcaactcctg 28506993  T
Q  286 cattgacaaagtgttaaaaagaat 309  Q
      |||||||||||| |||||||||    
T  28506994 gcttgacaaagtgtcaaaaagaat 28507017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 27350102 - 27350056
Alignment:
Q  245 attaaatggatgtttaagattgtagtataattcaattcctgcattga 291  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||    
T  27350102 attaaaaggatgtttaagattgtagtataattcaattactgcattga 27350056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 154
Target Start/End: Complemental strand, 27919997 - 27919936
Alignment:
Q  93 tgttagtttgaaggctttgttatatataataaactaacctgtgaagatgttttatgcttaga 154  Q
    ||||| |||||||||||| ||| ||| |||||||| |||||||||| |||||||||||||||    
T  27919997 tgttaatttgaaggctttattaaataaaataaactgacctgtgaagttgttttatgcttaga 27919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 27459242 - 27459338
Alignment:
Q  79 taagcagaagactatgttagtttgaaggctttgttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatga 175  Q
    |||||||||||| || ||| ||| |  ||||||||| ||   ||||||| |||||||||| |||||||||||||||||||  |||| ||||||||||    
T  27459242 taagcagaagaccattttaattttacagctttgttacatgacataaactcacctgtgaagttgttttatgcttagaagtatctaattgacctaatga 27459338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 27348472 - 27348381
Alignment:
Q  211 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 299  Q
    ||||||||||| |||| |||| |||||||||||||||||| |||||||| || ||||||    |||||||||||| ||||||||  |||||||    
T  27348472 cttcttcaacagttatctcgacaccctgcttaaaattaaa-ggatgtttcagtttgtagtaaatataattcaattactgcattggaaaagtgt 27348381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 27377812 - 27377721
Alignment:
Q  211 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 299  Q
    ||||||||||| |||| || |||||||||||||||||||| |||||||| ||  |||||    |||||||||||||||||||||  |||||||    
T  27377812 cttcttcaacagttatctcaataccctgcttaaaattaaa-ggatgtttcagtctgtagtatatataattcaattcctgcattggaaaagtgt 27377721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 27389193 - 27389252
Alignment:
Q  232 taccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattga 291  Q
    ||||||| | || |||||| |||||||| |||||||||||||||| ||||||||||||||    
T  27389193 taccctgttaaatattaaaaggatgtttcagattgtagtataattgaattcctgcattga 27389252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 457
Target Start/End: Original strand, 27459684 - 27459810
Alignment:
Q  330 ttgaaataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaa 429  Q
    ||||| |||||| |||||| |||| | |||| | |||| ||||| || ||||||  |||||||  ||||||||| |||| |||||||||||||||||  |    
T  27459684 ttgaagtaaaatttatttcttttaatgtttcttatttatcttta-atacacaataaggtggtattatattacattattttcctgagaaggtttgacgcta 27459782  T
Q  430 gtatcagtttctccaagtgaacgttgtt 457  Q
    | |||||||||| |||||| || |||||    
T  27459783 gcatcagtttctgcaagtggacattgtt 27459810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 28151395 - 28151344
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcg 230  Q
    |||| ||||||||||||||||||  || ||||||||||||||||||||||||    
T  28151395 tgtttttgtcttggcattagctgatgtagttccttcttcaacacttatttcg 28151344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 26113453 - 26113558
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaat-taaatggatgtttaagattg--tagtataat 275  Q
    ||||||| |||||||||| ||||   |  ||||||||||| || |||| | |||||||||||| |||| ||||| ||||||||||||||  |||||||||    
T  26113453 tgttattttcttggcattggctgatatatttccttcttcagcatttatatggataccctgctttaaatgtaaattgatgtttaagattgtatagtataat 26113552  T
Q  276 tcaatt 281  Q
    ||||||    
T  26113553 tcaatt 26113558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 277
Target Start/End: Original strand, 26205247 - 26205345
Alignment:
Q  179 tgttattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattc 277  Q
    ||||||| | ||||||||||||   ||  |||||||||||||  |||| |||||||||||||||||  ||||  |||| || |||||||||||||||||    
T  26205247 tgttattttattggcattagcttctgtatttccttcttcaacgtttatctcgataccctgcttaaatgtaaaatgatgctttagattgtagtataattc 26205345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 26235777 - 26235851
Alignment:
Q  208 ttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgttt-aagattgtagtataattcaatt 281  Q
    ||||||||||||||  ||| | |||||||||||||||  ||||  ||||||| ||||||||||||||||||||||    
T  26235777 ttccttcttcaacatatatctggataccctgcttaaatgtaaaatgatgtttaaagattgtagtataattcaatt 26235851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 460 - 529
Target Start/End: Original strand, 26178724 - 26178793
Alignment:
Q  460 tccattgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattg 529  Q
    |||||| || |||||||||| ||||||||||||||||| | | |||||| ||||||| ||| ||||||||    
T  26178724 tccattaattgttcattcattaactcctgtaacaagaatagatgcattagtgatcttgagcgattaattg 26178793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 372
Target Start/End: Complemental strand, 28135261 - 28135212
Alignment:
Q  323 gaagcacttgaaataaaatatatttcatttagtatttcatttttagcttt 372  Q
    ||||||||||||||||||| | |||| |||||||||||| ||||||||||    
T  28135261 gaagcacttgaaataaaatctttttcttttagtatttcacttttagcttt 28135212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 17744898 - 17744953
Alignment:
Q  122 taaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 177  Q
    |||||| ||||||||||  ||||||||||||||||||| |||| ||| ||||||||    
T  17744898 taaactcacctgtgaagtcgttttatgcttagaagtagctaattgacttaatgatg 17744953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 18025075 - 18025118
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaa 250  Q
    |||||||||||| || |||| |||||||||||||||||||||||    
T  18025075 gttccttcttcagcagttatctcgataccctgcttaaaattaaa 18025118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 177
Target Start/End: Original strand, 19046218 - 19046273
Alignment:
Q  122 taaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 177  Q
    |||||| ||||||||||  ||||||||||||||||||| |||| ||| ||||||||    
T  19046218 taaactcacctgtgaagtcgttttatgcttagaagtagctaattgacttaatgatg 19046273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 529
Target Start/End: Original strand, 26128685 - 26128744
Alignment:
Q  470 gttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattg 529  Q
    |||||||||| ||||||||||||||||| | | |||||| ||||||| ||| ||||||||    
T  26128685 gttcattcattaactcctgtaacaagaatagatgcattagtgatcttgagcgattaattg 26128744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 26128809 - 26128879
Alignment:
Q  370 tttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttc 440  Q
    ||||| ||||| ||| | |||||| ||||||||| || | ||||||||||||||| || ||||||||||||    
T  26128809 tttatttgcacgatgagatggtactatattacattatcttcctgagaaggtttgatggtagtatcagtttc 26128879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #73
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 28151330 - 28151284
Alignment:
Q  263 attgtagtataattcaattcctgcattgacaaagtgttaaaaagaat 309  Q
    ||||||||||||||||||| ||| | ||||||||||| |||||||||    
T  28151330 attgtagtataattcaatttctgtactgacaaagtgtgaaaaagaat 28151284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #74
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 27249845 - 27249808
Alignment:
Q  182 tattgtcttggcattagctgtcgtggttccttcttcaa 219  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  27249845 tattgtcttggcattagctgatgtggttccttcttcaa 27249808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #75
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 28037098 - 28037041
Alignment:
Q  120 aataaactaacctgtgaagatgttttatgcttagaagtagataatggacctaatgatg 177  Q
    |||||||| || ||||||| |||| ||||||||||| ||| |||| ||||||||||||    
T  28037098 aataaactcacatgtgaagttgttctatgcttagaaataggtaattgacctaatgatg 28037041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #76
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 18024979 - 18025023
Alignment:
Q  120 aataaactaacctgtgaagatgttttatgcttagaagtagataat 164  Q
    |||||||| |||||||||| |||| ||||||||||||||| ||||    
T  18024979 aataaactcacctgtgaagttgttatatgcttagaagtagctaat 18025023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #77
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 18025327 - 18025391
Alignment:
Q  334 aataaaatatatttcatttagtatttcatttttagctttatatgcacaatgcggtggtacgatat 398  Q
    ||||||||| ||||  || | |||||||||||||||||||||||||  || ||||||||| ||||    
T  18025327 aataaaataaattttcttaaatatttcatttttagctttatatgcaagattcggtggtactatat 18025391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #78
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 26129265 - 26129325
Alignment:
Q  182 tattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgctta 242  Q
    ||||||||| ||||||||||  |  ||||||||||||||| |||| | |||||||||||||    
T  26129265 tattgtcttagcattagctgatgcagttccttcttcaacatttatctggataccctgctta 26129325  T

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Target: chr3; HSP #79
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 26179321 - 26179381
Alignment:
Q  182 tattgtcttggcattagctgtcgtggttccttcttcaacacttatttcgataccctgctta 242  Q
    |||||||||||||||| |||  |  ||||||||||||||| |||| | |||||||||||||    
T  26179321 tattgtcttggcattaactgatgcagttccttcttcaacatttatctggataccctgctta 26179381  T

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Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 357 - 539
Target Start/End: Original strand, 8692895 - 8693077
Alignment:
Q  357 tttcatttttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgt 456  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||| |||||||    
T  8692895 tttcttttttagctttatatgcacaatgcagtggtacgatattacatgatttacctgagaaggtttgccggcaatatcagtttctccaagtggacgttgt 8692994  T
Q  457 tggtccattgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatcttcagctattaattgcatcaattaa 539  Q
    | |||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  8692995 ttgtccatcgattgttcattcatcaattcctgtaacaagaacagaagcattaatgatcttcacctattaattacatcaattaa 8693077  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 8692618 - 8692716
Alignment:
Q  211 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaagaat 309  Q
    |||||||||||||| ||||| || |||| |||||||||||  |||||||||||||| ||||||||||||||| | |||||||||| ||| |||||||||    
T  8692618 cttcttcaacacttgtttcgctaacctgattaaaattaaaaagatgtttaagattgcagtataattcaattctttcattgacaaaatgtcaaaaagaat 8692716  T

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Target: scaffold0257 (Bit Score: 111; Significance: 9e-56; HSPs: 3)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 364 - 514
Target Start/End: Complemental strand, 18596 - 18446
Alignment:
Q  364 tttagctttatatgcacaatgcggtggtacgatattacatgatttacctgagaaggtttgacggaagtatcagtttctccaagtgaacgttgttggtcca 463  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| | ||    
T  18596 tttagctttatatgcacaatgcggttgtaggatattacatgatttacctgagaaggtttgacggcaatatcagtttctccaagtggacgttgttgctgca 18497  T
Q  464 ttgatcgttcattcatcaactcctgtaacaagaacataagcattaatgatc 514  Q
    | |||  ||||||||||||||||||||||||||||||||||||||||||||    
T  18496 tcgatttttcattcatcaactcctgtaacaagaacataagcattaatgatc 18446  T

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Target: scaffold0257; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 207 - 311
Target Start/End: Complemental strand, 18728 - 18624
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 306  Q
    ||||||| |||||||||||||||  || ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18728 gttcctttttcaacacttatttcactaacctgcttaaaattgaaaagatgtttaagattgtagtataattcaattcctgcattgacaaagtgtcaaaaag 18629  T
Q  307 aatgc 311  Q
    |||||    
T  18628 aatgc 18624  T

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Target: scaffold0257; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 18806 - 18735
Alignment:
Q  99 tttgaaggctttgttatatataataaactaacctgtgaagatgttttatgcttagaagtagataatggacct 170  Q
    |||||||||||||||| ||| |||| ||| ||||||||||||||||| | |||||||||| |||||||||||    
T  18806 tttgaaggctttgttaaataaaatatactcacctgtgaagatgttttctccttagaagtacataatggacct 18735  T

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Target: scaffold0043 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 207 - 291
Target Start/End: Original strand, 51950 - 52034
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattga 291  Q
    ||||||||||||| |||||| ||| ||||||||| || |||||| |||||||||||||||||||||||||||||| |||||||||    
T  51950 gttccttcttcaaaacttatctcgctaccctgctaaatattaaaaggatgtttaagattgtagtataattcaattactgcattga 52034  T

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Target: scaffold0043; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 53670 - 53752
Alignment:
Q  211 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattg 290  Q
    ||||||||||| |||| |||| |||||||||||||||||| |||||||| || ||||||    |||||||||||||||||||||    
T  53670 cttcttcaacagttatctcgacaccctgcttaaaattaaa-ggatgtttcagtttgtagtatatataattcaattcctgcattg 53752  T

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Target: scaffold1142 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold1142
Description:

Target: scaffold1142; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 1605 - 1503
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattgacaaagtgttaaaaag 306  Q
    ||||||||||||||||| || ||| ||||||||| || | |||| | |||||||||||||||||||| ||||||||||||||||| || | || ||||||    
T  1605 gttccttcttcaacactcatctcgttaccctgctaaacaataaaagaatgtttaagattgtagtatatttcaattcctgcattgaaaaggcgtcaaaaag 1506  T
Q  307 aat 309  Q
    |||    
T  1505 aat 1503  T

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Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 22394456 - 22394372
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtataattcaattcctgcattga 291  Q
    ||||||||||||| |||||| ||  ||||||||| || |||||| | |||||||||||||||||||||||||||| |||||||||    
T  22394456 gttccttcttcaaaacttatctcattaccctgctaaacattaaaagcatgtttaagattgtagtataattcaattactgcattga 22394372  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 22392741 - 22392650
Alignment:
Q  211 cttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtag----tataattcaattcctgcattgacaaagtgt 299  Q
    ||||||||||| |||| |||| |||||||||||| ||||| |||||||| || ||||||    |||||| ||||||||||||||  |||||||    
T  22392741 cttcttcaacagttatctcgacaccctgcttaaacttaaa-ggatgtttcagtttgtagtatatataatacaattcctgcattggaaaagtgt 22392650  T

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Target: scaffold1163 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 207 - 272
Target Start/End: Complemental strand, 66 - 1
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaattaaatggatgtttaagattgtagtat 272  Q
    ||||||||||||| |||||| ||| ||||||||| || |||||| |||||||||||||||||||||    
T  66 gttccttcttcaaaacttatctcgctaccctgctaaatattaaaaggatgtttaagattgtagtat 1  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 9328789 - 9328828
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaat 246  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  9328789 gttccttcttcaacacttatttcgctaacctgcttaaaat 9328828  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 9382566 - 9382605
Alignment:
Q  207 gttccttcttcaacacttatttcgataccctgcttaaaat 246  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  9382566 gttccttcttcaacacttatttcgctaacctgcttaaaat 9382605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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