View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13832_low_6 (Length: 439)

Name: NF13832_low_6
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13832_low_6
NF13832_low_6
[»] chr8 (5 HSPs)
chr8 (18-429)||(44122327-44122741)
chr8 (29-294)||(44143098-44143368)
chr8 (334-396)||(24197831-24197893)
chr8 (334-423)||(32778531-32778623)
chr8 (341-398)||(39709634-39709691)
[»] chr4 (6 HSPs)
chr4 (18-164)||(50032094-50032240)
chr4 (18-91)||(50024976-50025049)
chr4 (334-398)||(24478456-24478520)
chr4 (333-399)||(38944383-38944449)
chr4 (371-429)||(50032249-50032310)
chr4 (334-380)||(50981733-50981779)
[»] chr2 (4 HSPs)
chr2 (334-400)||(816405-816471)
chr2 (334-398)||(39417503-39417567)
chr2 (334-426)||(18741401-18741496)
chr2 (334-398)||(22999136-22999200)
[»] scaffold0160 (1 HSPs)
scaffold0160 (334-398)||(22143-22207)
[»] chr1 (2 HSPs)
chr1 (334-398)||(37186820-37186884)
chr1 (334-398)||(35068935-35068999)
[»] chr3 (3 HSPs)
chr3 (334-397)||(4659600-4659663)
chr3 (334-386)||(50735880-50735932)
chr3 (334-386)||(50776923-50776975)
[»] chr7 (4 HSPs)
chr7 (340-398)||(6328183-6328241)
chr7 (334-380)||(36251729-36251775)
chr7 (334-398)||(4887517-4887580)
chr7 (334-429)||(8037571-8037669)
[»] chr5 (2 HSPs)
chr5 (334-380)||(24406642-24406688)
chr5 (334-398)||(10083932-10083996)


Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 44122327 - 44122741
Alignment:
Q  18 aagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttattctatgagtgttgtagcaatggcgact 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44122327 aagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttattctatgagtgttgtagcaatggcgact 44122426  T
Q  118 gttaaacaagacgaac--taataattcgaatattcatcatgcatgggacctccctccccatctcattaaataaacaataggataaattacannnnnnnnn 215  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  44122427 gttaaacaagacgaactataataattcgaatattcatcatgcatgggacctccctccccatctcattaaataaacaataggataaattaca--ttttttt 44122524  T
Q  216 atccttttgagcaccttcaatggtgcaacccaaatgtatagtttagtggagtctacattgccacgttatcttaaagaaccacattcatgttttgcttcaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44122525 atccttttgagcaccttcaatggtgcaacccaaatgtatagtttagtggagtctacattgccacgttatcttaaagaaccacattcatgttttgcttcaa 44122624  T
Q  316 tggtacaacnnnnnnnnaatagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc---atcatgacgttcaa 412  Q
    |||||||||        |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||     
T  44122625 tggtacaacttttttttaatagacgagatgtcaaagccagcataaacttacacacataaagtggaggtatcagagttcgaaccctaatcatgacgttcag 44122724  T
Q  413 cataataatttcggtat 429  Q
    |||||||||||| ||||    
T  44122725 cataataatttcagtat 44122741  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 294
Target Start/End: Original strand, 44143098 - 44143368
Alignment:
Q  29 tagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttattctatgagtgttgtagcaatggcgactgttaaacaaga 128  Q
    |||||| |||||| ||||||||| ||||| ||||||| ||||| |||||||||||||  ||||||||| ||||||||||||||||||||| ||||||| |    
T  44143098 tagcaagttttccggctaactcaggtccatattaataatgtta-aaaataaacaaacactattctatgggtgttgtagcaatggcgactgctaaacaaaa 44143196  T
Q  129 cgaactaataattcgaatattcatcatgcatgg---------gacctccctccccatctcattaaata---aacaataggataaattacannnnnnnnna 216  Q
     |||||||| ||||||||||  ||||| |||||         | ||||||||||| |||| |||||||   || ||||||||||||||||         |    
T  44143197 ggaactaatcattcgaatatctatcatccatggggtacgtatggcctccctccccttctccttaaataaataataataggataaattaca---tttttta 44143293  T
Q  217 tccttttgagcaccttcaatggtgcaacccaaatgtatagtttagtggagtctacattgccacgttatcttaaagaac 294  Q
    ||  |    |||||||||||||||||||||||||||||   |||||||||||||||||||||| | ||||||||||||    
T  44143294 tcact---cgcaccttcaatggtgcaacccaaatgtatctcttagtggagtctacattgccacatcatcttaaagaac 44143368  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 396
Target Start/End: Original strand, 24197831 - 24197893
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaa 396  Q
    ||||| |||||| |||| ||| |||||||| |||||||||||||||| ||||| |||||||||    
T  24197831 atagaagagatgacaaaaccatcataaactcacacacataaagtggaggtatcggagttcgaa 24197893  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 423
Target Start/End: Complemental strand, 32778623 - 32778531
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc---atcatgacgttcaacataataattt 423  Q
    |||||||||||| |||||||| |||||||  ||||||| |||||||| ||||| |||||| ||||   |||||||||| | || |||||||||    
T  32778623 atagacgagatgacaaagccatcataaacccacacacacaaagtggaggtatcggagttcaaaccccgatcatgacgtacgacttaataattt 32778531  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 39709634 - 39709691
Alignment:
Q  341 agatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    ||||| |||| ||| |||||||| ||||| |||||||||| ||||||||||| |||||    
T  39709634 agatggcaaaaccatcataaactcacacatataaagtggaggtatcagagtttgaacc 39709691  T

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Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 50032094 - 50032240
Alignment:
Q  18 aagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttattctatgagtgttgtagcaatggcgact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  50032094 aagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttattttatgagtgttgtagcaatggcaact 50032193  T
Q  118 gttaaacaagacgaactaataattcgaatattcatcatgcatgggac 164  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  50032194 gtaaaacaagacgaactaataattcgaatattcatcatgcatgggac 50032240  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 50024976 - 50025049
Alignment:
Q  18 aagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttatt 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50024976 aagtaaaggaatagcaaattttccagctaactcaagtccaaattaatattgttagaaaataaacaaactttatt 50025049  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 24478456 - 24478520
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    ||||| |||||| |||| ||| |||||||  ||||| |||||||||| |||||||||||||||||    
T  24478456 atagaggagatgacaaaaccatcataaacccacacatataaagtggaggtatcagagttcgaacc 24478520  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 399
Target Start/End: Original strand, 38944383 - 38944449
Alignment:
Q  333 aatagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacca 399  Q
    ||||||||||||| |||| ||| |||||||| ||| |||||||||||| ||||  | ||||||||||    
T  38944383 aatagacgagatgacaaaaccatcataaactcacatacataaagtggaggtattggggttcgaacca 38944449  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 50032249 - 50032310
Alignment:
Q  371 ataaagtggatgtatcagagttcgaa--cca-tcatgacgttcaacataataatttcggtat 429  Q
    |||||||||| |||||||||||||||  ||| ||||||||| || |||||||||||||||||    
T  50032249 ataaagtggaggtatcagagttcgaactccagtcatgacgtccagcataataatttcggtat 50032310  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 50981733 - 50981779
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtgga 380  Q
    ||||| ||||||||||||||| |||||||| ||||||| ||||||||    
T  50981733 atagaagagatgtcaaagccatcataaactcacacacacaaagtgga 50981779  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 400
Target Start/End: Complemental strand, 816471 - 816405
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaaccat 400  Q
    |||||||||||| |||| ||| |||||||| ||||||| |||||||||||| | | |||||||||||    
T  816471 atagacgagatggcaaaaccatcataaactcacacacacaaagtggatgtaccggggttcgaaccat 816405  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 39417567 - 39417503
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    ||||||||||||  |||| || |||||||| ||||||||||||||||  |||| |||||||||||    
T  39417567 atagacgagatgataaagtcatcataaactcacacacataaagtggagatatcggagttcgaacc 39417503  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 18741401 - 18741496
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc---atcatgacgttcaacataataatttcgg 426  Q
    |||||||||||| ||||| || |||||||| ||||||| |||||||| ||| | ||||| |||||   ||||||| |||| || ||| ||||||||    
T  18741401 atagacgagatgacaaagtcatcataaactcacacacacaaagtggaggtaccggagtttgaacctcgatcatgatgttcgacctaacaatttcgg 18741496  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 22999200 - 22999136
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    |||||||||||| |||| ||| |||||||| ||||||| |||||||| || || | |||||||||    
T  22999200 atagacgagatgacaaaaccatcataaactcacacacacaaagtggaggtgtcggggttcgaacc 22999136  T

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Target: scaffold0160 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 22207 - 22143
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    |||||||||||| ||||| || |||||||| ||||||| |||||||| ||||| | |||||||||    
T  22207 atagacgagatgacaaagtcatcataaactcacacacacaaagtggaggtatcggggttcgaacc 22143  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 37186820 - 37186884
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    ||||| |||||| |||||||| |||||||| | ||||| |||||||| ||| |||||||||||||    
T  37186820 atagaagagatgacaaagccatcataaactcaaacacacaaagtggaggtaccagagttcgaacc 37186884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 35068999 - 35068935
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    |||||||||||| |||||||  |||||||| ||||||| |||||||| ||||  || ||||||||    
T  35068999 atagacgagatggcaaagccgtcataaactcacacacacaaagtggaggtattggaattcgaacc 35068935  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 397
Target Start/End: Complemental strand, 4659663 - 4659600
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaac 397  Q
    ||||||||||||  |||| ||  ||||||| |||||||||||||||| ||||||| ||||||||    
T  4659663 atagacgagatgaaaaagtcattataaactcacacacataaagtggaggtatcagggttcgaac 4659600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 50735932 - 50735880
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatc 386  Q
    |||||||||||| ||||| || | |||||||||||||||||| |||| |||||    
T  50735932 atagacgagatgacaaagtcatcgtaaacttacacacataaaatggaggtatc 50735880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 50776923 - 50776975
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatc 386  Q
    |||||||||||| ||||| || | |||||||||||||||||| |||| |||||    
T  50776923 atagacgagatgacaaagtcatcgtaaacttacacacataaaatggaggtatc 50776975  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 6328183 - 6328241
Alignment:
Q  340 gagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    |||||| |||| ||| |||||||| |||||||||||||||| ||||| | |||||||||    
T  6328183 gagatgacaaaaccatcataaactcacacacataaagtggaggtatcggggttcgaacc 6328241  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 36251775 - 36251729
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtgga 380  Q
    |||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  36251775 atagacgagatggcaaaaccatcataaactcacacacataaagtgga 36251729  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 4887517 - 4887580
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    |||||||| ||| ||||||||  ||||||| ||||||| || ||||||||||||| |||||||||    
T  4887517 atagacgaaatggcaaagccattataaactcacacacacaa-gtggatgtatcagggttcgaacc 4887580  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 429
Target Start/End: Complemental strand, 8037669 - 8037571
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc---atcatgacgttcaacataataatttcggtat 429  Q
    |||||||||||| ||||  || |||||||| | ||||||||| |||| |||   ||||||||||    |||||||||| |||| |||||||||||||||    
T  8037669 atagacgagatggcaaaatcatcataaactcatacacataaaatggaggtactggagttcgaactccgatcatgacgtccaacctaataatttcggtat 8037571  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 24406688 - 24406642
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtgga 380  Q
    |||||||||||| |||||||| ||||||| |||||||| ||||||||    
T  24406688 atagacgagatggcaaagccatcataaacatacacacacaaagtgga 24406642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 398
Target Start/End: Original strand, 10083932 - 10083996
Alignment:
Q  334 atagacgagatgtcaaagccaacataaacttacacacataaagtggatgtatcagagttcgaacc 398  Q
    |||||||||| | ||||| || |||||||||||||||| ||||||||  || | |||||||||||    
T  10083932 atagacgagagggcaaagtcatcataaacttacacacacaaagtggagctaccggagttcgaacc 10083996  T

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