View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13832_low_7 (Length: 394)
Name: NF13832_low_7
Description: NF13832
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13832_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 145 - 376
Target Start/End: Complemental strand, 1294720 - 1294489
Alignment:
| Q |
145 |
tgtcattggacacttatgcgaatgggctcaaattaatgggccacatgaattatctcactttaaccccttttannnnnnnna-aaaaggaaattaacaatg |
243 |
Q |
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| T |
1294720 |
tgtcattggacacttatgcgaatgggctcaaattaatgggc-acatgaattatctcactttaaccccttttaatttttttttaaaaggaaattaacaatg |
1294622 |
T |
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| Q |
244 |
aaatgcataaaatgaaatgaccatcttcggattgtctaatttaagggtgtacatcgtttcagtcaatccttcaaccctctcgattcaaccaacttaaacc |
343 |
Q |
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| T |
1294621 |
aaatgcataaaatgaaatgatcatcttcggattgtctcatttaagggtgtacatcgtttcgatcaatccttcaaccctctcgattcaaccaacttaaacc |
1294522 |
T |
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| Q |
344 |
acaaaggcacaaacaatggattgtgttaggtaa |
376 |
Q |
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| T |
1294521 |
acaaaggcacaaacaatggattgtgttaggtaa |
1294489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1294865 - 1294793
Alignment:
| Q |
1 |
ataaagaatgagaggaacaagcaagctgcttgttgcaaacatttcaaggacataacactgttgcataagaatg |
73 |
Q |
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| T |
1294865 |
ataaagaatgagaggaacaagcaagctgcttgttgcaaacatttcaaggacataacactgttgcataagaatg |
1294793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 246 - 376
Target Start/End: Complemental strand, 11206538 - 11206410
Alignment:
| Q |
246 |
atgcataaaatgaaatgaccatcttcggattgtctaatttaagggtgtacatcgtttcagtcaatccttcaaccctctcgattcaaccaacttaaaccac |
345 |
Q |
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| T |
11206538 |
atgcataaaatgaaatgatcatcttcggattgcctcatttaagggtgtacgtcgtttcagtcaatccttcaaccttctcgattcaaccaacttaaaccac |
11206439 |
T |
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| Q |
346 |
aaaggcacaaacaatggattgtgttaggtaa |
376 |
Q |
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| T |
11206438 |
aaaggcacaa--aatggattgtgttaggtaa |
11206410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 11207350 - 11207284
Alignment:
| Q |
7 |
aatgagaggaacaagcaagctgcttgttgcaaacatttcaaggacataacactgttgcataagaatg |
73 |
Q |
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| T |
11207350 |
aatgagaggaacaagcaagctgtttgttgcaaacatttcaaggacataacactcttgcataagaatg |
11207284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 11207212 - 11207146
Alignment:
| Q |
145 |
tgtcattggacacttatgcgaatgggctcaaattaatgggccacatgaattatctcactttaacccc |
211 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||| |
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| T |
11207212 |
tgtcattggacacttatgcgaatgggttcaaattaatggaccacataaattatctcactttaacccc |
11207146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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