View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13833_low_1 (Length: 614)
Name: NF13833_low_1
Description: NF13833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13833_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 51895342 - 51895941
Alignment:
| Q |
1 |
aagttagttttagaatagcttatcaaatcaaatgaatgataagttagttttagaatagcttaactgtagtttttagtctttttcagaatattctctcctc |
100 |
Q |
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| T |
51895342 |
aagttagttttagaataacttatcaaatcaaatgaatgataagttagttttagaatagcttaactgtagtttttagtctttttcggaatattctctcctc |
51895441 |
T |
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| Q |
101 |
cattaatgaacaccaacaaaattcaaaattgttcattatacacaaacaacaaatcattagtgtaattgaaataacgctttactctctactaatcacttta |
200 |
Q |
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| T |
51895442 |
cattaatgaacaccaacaaaattcaaaattgttcattatacacaaacaacaaatcattagtgtaattgaaataacgctttgctctctactaatcacttta |
51895541 |
T |
|
| Q |
201 |
caaatgagcaaaattcaagagttacatatcaaagaatgtatctgtcagatcactagtgaacctgattcaaccatttgaaagatatacaaataacaagtag |
300 |
Q |
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| T |
51895542 |
caaatgagcaaaattcaagagttacatatcaaagaatgtatctgtcagatcactagtgaacctgattcaaccatttgaaagatatacaaataacaagtag |
51895641 |
T |
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| Q |
301 |
ctgcatgtaaaataggaaaaatattcaagtaaaccttactgag-aaaataatgtgctaaaataactgtttgtctctgattaccacaaacagattataacc |
399 |
Q |
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| T |
51895642 |
ctgcatgtaaaataggaaaaatattcaagtaaaccttactgagaaaaatgatgtgctaaaataactgtttgtctctgattaccacaaacagattataacc |
51895741 |
T |
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| Q |
400 |
ctttggttttggatgatgactagtgttgcagtcatgggacctattatggtcgcttggccttcaatttatcatcacttattggataggcaatcactaggac |
499 |
Q |
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| T |
51895742 |
ctttggttttggatgatgactagtgttgcagtcatgggacctattatggtcgcttggccttcaatttatcatcacttattggataggcaatcactaggac |
51895841 |
T |
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| Q |
500 |
catattttgactattcttaaaatactatgttgaaaaagactaatgatggttgttcatgaatcacgacagacataacatttcaatatttttgtctccaaac |
599 |
Q |
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| T |
51895842 |
catattttgactattcttaaaatactatgttgaaaaagactaatgatggttgttcatgaatcacgacagacataacatttcaatatttttgtctccaaac |
51895941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 51895314 - 51895363
Alignment:
| Q |
12 |
agaatagcttatcaaatcaaatgaatgataagttagttttagaatagctta |
62 |
Q |
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| T |
51895314 |
agaatagcttatcaaatcaaatgaatga-aagttagttttagaataactta |
51895363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 51895071 - 51895139
Alignment:
| Q |
41 |
aagttagttttagaatagcttaactgtagtttttagtctttttcagaatattctctcctccattaatgaa |
110 |
Q |
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| T |
51895071 |
aagttagttttagaatagcttaa-tgtaattgttagtcttgtttagaacattcttttctccattagtgaa |
51895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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