View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13833_low_2 (Length: 406)
Name: NF13833_low_2
Description: NF13833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13833_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 142 - 402
Target Start/End: Original strand, 3684292 - 3684552
Alignment:
| Q |
142 |
gcacatatcttcccatttcgctgacatgacagagaacaccttccaattctcatcaccatttttcaaaagtaacgacgaatctgaggtggacaacttgctg |
241 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3684292 |
gcacatgtcttcccatttcgctgacatgacagagaacgccttccaattctcatcaccatttttcaaaagtaacgacgaatctgaggtggacaacttgctg |
3684391 |
T |
|
| Q |
242 |
agaatgaggnnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtagccatagtcaaagtagccacgattgttgggttcattattctc |
341 |
Q |
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||||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3684392 |
agaatgaagttttttttccatggcacgtgatagcaacgacctttttagggtacatgtacccatagtcatagtagccacgattgttgggttcattattctc |
3684491 |
T |
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| Q |
342 |
ccgtggtgaagtccatggagttgagaccggtctgcttctgccatgaatgctgctctgtgct |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3684492 |
ccgtggtgaagtccatggagttgagaccggtctgcttctgccatgaatgctgctgtgtgct |
3684552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 3684093 - 3684216
Alignment:
| Q |
18 |
tgaggagtacgagcaaggaaccatgatataaacactcacaagcgtcctctaacaacaaatcaccctcgctctcccctaagaactttatgcccctgccatc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3684093 |
tgaggagtacgagcaaggaaccatgatataaacactcagaagcgtcctctaacaacaaatcaccctcgctctcccctaagaactttatgcccctgccacc |
3684192 |
T |
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| Q |
118 |
atcaaccaaagctttggccactaa |
141 |
Q |
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| T |
3684193 |
atcaaccaaagctttggccactaa |
3684216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 142 - 307
Target Start/End: Original strand, 3676119 - 3676292
Alignment:
| Q |
142 |
gcacatatcttcccatttcgctgacatgacagagaacaccttccaattctcatca-------ccatttttcaaaagtaacgacgaatctgaggtggacaa |
234 |
Q |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||| |
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| T |
3676119 |
gcacatatcttcccattttgctgacatgtcagagaacaccttccaattctcatgagtcatgaccacttttcaaaagtaatgacgaatctgaggtggacaa |
3676218 |
T |
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| Q |
235 |
cttgctgagaatgagg-nnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtagccatagt |
307 |
Q |
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|||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
3676219 |
cttgctgagaatgaggttgttttttccatggcatgtgacaacaacgacctttttagggtacatgtagccatagt |
3676292 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 9159180 - 9159140
Alignment:
| Q |
259 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
299 |
Q |
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| T |
9159180 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
9159140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 9171248 - 9171288
Alignment:
| Q |
259 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
299 |
Q |
| |
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| T |
9171248 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
9171288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 7013266 - 7013306
Alignment:
| Q |
259 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
299 |
Q |
| |
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||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
7013266 |
ccatggcacgtaacaacaacgacctttttagggtacatgta |
7013306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 7026202 - 7026242
Alignment:
| Q |
259 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
299 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
7026202 |
ccatggcacgtaacaacaacgacctttttagggtacatgta |
7026242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 213023 - 212981
Alignment:
| Q |
66 |
ctaacaacaaatcaccctcgctctcccctaagaactttatgcc |
108 |
Q |
| |
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| T |
213023 |
ctaacaacaaatcaccctcgctctccactaagaatttcatgcc |
212981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 7047252 - 7047293
Alignment:
| Q |
259 |
ccatggcacgtgacagcaacgacctttttagggtacatgtag |
300 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| |||||||| |
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| T |
7047252 |
ccatggcacgtgacagcaatgaccttttcagggaacatgtag |
7047293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 7041918 - 7041950
Alignment:
| Q |
259 |
ccatggcacgtgacagcaacgacctttttaggg |
291 |
Q |
| |
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||||||||||||||||||||||||||| ||||| |
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| T |
7041918 |
ccatggcacgtgacagcaacgacctttataggg |
7041950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 9159277 - 9159225
Alignment:
| Q |
163 |
tgacatgacagagaacaccttccaattctcatcaccatttttcaaaagtaacg |
215 |
Q |
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||||||| ||| || ||||||||||| |||||||||| |||||||||||||| |
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| T |
9159277 |
tgacatgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacg |
9159225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 9171151 - 9171203
Alignment:
| Q |
163 |
tgacatgacagagaacaccttccaattctcatcaccatttttcaaaagtaacg |
215 |
Q |
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||||||| ||| || ||||||||||| |||||||||| |||||||||||||| |
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| T |
9171151 |
tgacatgtcagggatcaccttccaatcctcatcaccacatttcaaaagtaacg |
9171203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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