View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13833_low_3 (Length: 399)

Name: NF13833_low_3
Description: NF13833
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13833_low_3
NF13833_low_3
[»] chr4 (47 HSPs)
chr4 (13-386)||(48852833-48853206)
chr4 (30-387)||(45371612-45371963)
chr4 (130-387)||(49043703-49043960)
chr4 (173-387)||(49038419-49038627)
chr4 (27-389)||(45365753-45366118)
chr4 (17-142)||(49043975-49044097)
chr4 (8-277)||(48147358-48147630)
chr4 (130-387)||(49048090-49048346)
chr4 (213-286)||(7790432-7790505)
chr4 (213-286)||(7773461-7773534)
chr4 (213-353)||(7771747-7771887)
chr4 (213-285)||(7878735-7878807)
chr4 (31-120)||(48705190-48705276)
chr4 (221-283)||(48864395-48864457)
chr4 (25-189)||(48861418-48861589)
chr4 (215-286)||(7908656-7908727)
chr4 (16-280)||(37826632-37826905)
chr4 (209-304)||(48861636-48861731)
chr4 (216-387)||(48870915-48871086)
chr4 (216-387)||(48876219-48876390)
chr4 (213-283)||(7765994-7766064)
chr4 (222-286)||(7813838-7813902)
chr4 (219-283)||(45384531-45384595)
chr4 (21-270)||(48903115-48903364)
chr4 (216-387)||(48886601-48886772)
chr4 (213-283)||(7786816-7786886)
chr4 (95-279)||(48156072-48156262)
chr4 (222-286)||(7800998-7801062)
chr4 (31-387)||(48898898-48899266)
chr4 (213-280)||(50666667-50666734)
chr4 (213-279)||(7237386-7237452)
chr4 (29-70)||(50250626-50250667)
chr4 (29-115)||(7773641-7773724)
chr4 (36-142)||(49048361-49048464)
chr4 (13-70)||(48170419-48170476)
chr4 (96-196)||(45384630-45384730)
chr4 (35-67)||(48863421-48863453)
chr4 (35-67)||(49041006-49041038)
chr4 (167-286)||(48863571-48863690)
chr4 (18-57)||(48891593-48891632)
chr4 (29-123)||(50669247-50669338)
chr4 (224-286)||(7823332-7823394)
chr4 (29-70)||(7771563-7771604)
chr4 (29-70)||(7790248-7790289)
chr4 (27-67)||(7765802-7765842)
chr4 (35-71)||(48876026-48876062)
chr4 (223-271)||(50672860-50672908)
[»] chr6 (3 HSPs)
chr6 (17-387)||(21015980-21016347)
chr6 (225-283)||(21979267-21979325)
chr6 (29-120)||(21979439-21979527)
[»] chr3 (4 HSPs)
chr3 (17-279)||(11005571-11005830)
chr3 (16-386)||(11015027-11015394)
chr3 (16-279)||(11024146-11024406)
chr3 (14-387)||(47451435-47451811)
[»] chr8 (15 HSPs)
chr8 (13-271)||(4031577-4031815)
chr8 (308-387)||(4030323-4030402)
chr8 (222-279)||(12200703-12200760)
chr8 (222-279)||(12445131-12445188)
chr8 (222-283)||(15349244-15349305)
chr8 (327-387)||(15349349-15349409)
chr8 (310-352)||(4962089-4962131)
chr8 (220-277)||(4962161-4962221)
chr8 (31-69)||(15349044-15349082)
chr8 (218-279)||(12195681-12195742)
chr8 (218-279)||(12440109-12440170)
chr8 (83-115)||(12200558-12200590)
chr8 (310-382)||(12200788-12200860)
chr8 (83-115)||(12444986-12445018)
chr8 (310-382)||(12445216-12445288)
[»] chr5 (8 HSPs)
chr5 (217-345)||(29688485-29688613)
chr5 (173-283)||(42561972-42562082)
chr5 (162-280)||(9120058-9120182)
chr5 (26-265)||(179217-179462)
chr5 (32-127)||(29696401-29696493)
chr5 (32-135)||(29688297-29688397)
chr5 (19-67)||(9119915-9119963)
chr5 (217-280)||(29712083-29712146)
[»] chr7 (1 HSPs)
chr7 (212-354)||(48884175-48884317)
[»] chr1 (6 HSPs)
chr1 (173-282)||(24367477-24367586)
chr1 (173-283)||(24340720-24340833)
chr1 (173-283)||(24353085-24353198)
chr1 (173-280)||(24310525-24310635)
chr1 (215-282)||(24416132-24416199)
chr1 (230-283)||(24323139-24323192)
[»] chr2 (1 HSPs)
chr2 (336-387)||(29350897-29350948)


Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 48852833 - 48853206
Alignment:
Q  13 cagagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaagg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48852833 cagagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaagg 48852932  T
Q  113 aaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatggggg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48852933 aaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggtcatggggg 48853032  T
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactactt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48853033 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttttagttccattcccactcactactt 48853132  T
Q  313 ttccccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatg 386  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48853133 ttccccaatatgttgtacaaagagtggtgatattattggaacggatggtgatagtggattggtgaagtatgatg 48853206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 30 - 387
Target Start/End: Complemental strand, 45371963 - 45371612
Alignment:
Q  30 ttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagttgtc 129  Q
    |||||||||||||| |||||||| ||||||||||||||||| | |||| |   |||||| | |||||||||||||||||| |||||||||||||| ||||    
T  45371963 ttaatggggctatttattggttgtcttttcgtcatgatttatcgatgagt---gttattcttgcctttgatttaatggaacggaaacttttagagatgtc 45371867  T
Q  130 tttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaata 229  Q
    |||||| |||| |||| ||| ||  ||||| ||||| ||||| ||||||||  || ||||||| ||| | ||||| | |  ||| |||||||||||||||    
T  45371866 tttgcctgatggttttgaccctggtcctacatattgtgatttttgggtattcggaaaatttctcagtctttgggctaagaaggaagatacagttgaaata 45371767  T
Q  230 tgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaatatgttgta 329  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||| |||||||| ||     |  | |||| ||||  |||||||||||| | |||||||    
T  45371766 tgggttatgaaagaatacaaagtgcattcgtcttggactaagacttttgttcttcctatcgatggcgttccaactcggtacttttccccattgtgttgta 45371667  T
Q  330 caaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||| || |||||||| |||||||  |||||   | ||||||||||||||||||||||    
T  45371666 caaaaagcggtgatataattggaacagatgg---tcgtggattggtgaagtatgatga 45371612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 130 - 387
Target Start/End: Complemental strand, 49043960 - 49043703
Alignment:
Q  130 tttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaata 229  Q
    |||||| | ||||||| | |||||||||||  |||| ||||||||||||||| | ||| |||| ||| ||||| | |    | |||||| ||||||||||    
T  49043960 tttgccaggtgattttgaacatgaacctacagattgtgatttgtgggtatttggtgaacttcttagtgtatggactagacagaatgatatagttgaaata 49043861  T
Q  230 tgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaatatgttgta 329  Q
    ||||| ||||||||||||||||||| |||||| |||||||||||||||||| |||||  |  |  |||||||||||| |||||  | |||||||||||||    
T  49043860 tgggtgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattacttcgctccaatatgttgta 49043761  T
Q  330 caaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||| | |||||||||||||||||  ||||||||   |||||||||||||||||||||    
T  49043760 caaaaattggtgatattattggaactgatggtgaagttggattggtgaagtatgatga 49043703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 173 - 387
Target Start/End: Complemental strand, 49038627 - 49038419
Alignment:
Q  173 tgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaaga 272  Q
    ||||||||| |||||||||| ||| ||||||| |||| |  || ||| |||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  49038627 tgggtatttcgagaatttctcagtgtatgggctatggagcgtgctaccgttgaaatatgggtgatgaaagaatacaaagttcattcgtcttggactaaga 49038528  T
Q  273 ctcttgttctttcttgtagttccattcccactcactacttttccccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggatt 372  Q
    |||||||||| |||  ||||  ||||||      |||||||||||| |||||||||||||| |||||| ||||||||||||  |||||| ||| | ||||    
T  49038527 ctcttgttctgtctattagtggcattcc------ctacttttcccctatatgttgtacaaaaagtggtcatattattggaacagatggttataatcgatt 49038434  T
Q  373 ggtgaagtatgatga 387  Q
    | |||||||||||||    
T  49038433 gatgaagtatgatga 49038419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 389
Target Start/End: Complemental strand, 45366118 - 45365753
Alignment:
Q  27 tttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagtt 126  Q
    ||||||||||||||||||||||||| ||||||| || || ||| | | || ||   |||||| |  ||||||||||||| ||||||||||||||  |  |    
T  45366118 tttttaatggggctattcattggtttgcttttcatcttggtttgcgattggat---gttattatttcctttgatttaatcgaaaggaaacttttttatat 45366022  T
Q  127 gtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgata------ca 220  Q
       ||| || ||||| ||| ||| |||||||  | |||| | ||||||||||||| |||||||| | ||| | ||||| ||||   ||||||      ||    
T  45366021 tcattttccagatgagtttaaccgtgaacctcacgattgtggtttgtgggtatttggagaatttttcagtttttgggctatggattatgataatgataca 45365922  T
Q  221 gttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaa 320  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||  |||||| ||  |  |  |||||||||||| |||||||||||      
T  45365921 gttgaaatatgggtgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctt 45365822  T
Q  321 tatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatgatg 389  Q
    |||| | |||||| || ||||||||||||||||  |||| |  || | |||||||||||||| ||||||    
T  45365821 tatgctctacaaaaagcggtgatattattggaacagatgatcttaatagattggtgaagtataatgatg 45365753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 142
Target Start/End: Complemental strand, 49044097 - 49043975
Alignment:
Q  17 gtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaac 116  Q
    ||||||||||| ||||||||||||||||| ||||||||||||| || ||||||| |||||   ||||||||||| |||||||||||||| ||||||||||    
T  49044097 gtagggtcgctctttaatggggctattcactggttggcttttcatcttgatttatcaatg---aatgttattgttgcctttgatttaattgaaaggaaac 49044001  T
Q  117 ttttagagttgtctttgccggatgat 142  Q
    |||||||  | |||||||| ||||||    
T  49044000 ttttagacatatctttgccagatgat 49043975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 48147630 - 48147358
Alignment:
Q  8 gagcacagagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatgg 107  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||   |||||||| ||| |    |||||||| | || |||||||||||||    
T  48147630 gagcatagagtagggtcactttttagtggggctattcattggttggcttttcacaatgatttagcaagg---gatgttattattgcatttgatttaatgg 48147534  T
Q  108 aaaggaaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccat 207  Q
    |||||| |||||||||| || |||| || |||| ||||  || |||| ||   ||| |  |||||||||||||| || ||||||| ||| ||  ||  ||    
T  48147533 aaaggagacttttagagatgccttttccagatggttttggccttgaatctgaatatagtcatttgtgggtatttggacaatttctcagtctaacgggtat 48147434  T
Q  208 gggggatga------tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactctt 277  Q
    ||   ||||       | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  48147433 ggatcatgacaatagcagagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagactctt 48147358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 130 - 387
Target Start/End: Complemental strand, 49048346 - 49048090
Alignment:
Q  130 tttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaata 229  Q
    |||||| | ||||||| | ||| |||||||  |||| ||||||||||||||  | || ||||| ||| ||||| | | |  |||||||| ||||||||||    
T  49048346 tttgccaggtgattttgaacattaacctacagattgtgatttgtgggtattg-gtgagtttctcagtgtatggactaagcaggatgatatagttgaaata 49048248  T
Q  230 tgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttccccaatatgttgta 329  Q
    ||||| |||||||| || ||||||| |||||| |||||||||||| ||||| |||||  |  |  ||||||||| || | ||| || ||||||||  |||    
T  49048247 tgggtgatgaaagagtataaagtgcattcgtcatggactaagacttttgttttttctactgatgtcattcccacccattgcttctctccaatatgccgta 49048148  T
Q  330 caaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||| |||||||||||||||| ||  ||||||||   ||||||||||||||| |||||    
T  49048147 caaaaagtggtgatattattgcaactgatggtgaagttggattggtgaagtacgatga 49048090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 7790432 - 7790505
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 286  Q
    |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  7790432 atgatacaattgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttct 7790505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 7773534 - 7773461
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 286  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||  ||||||||||||||    
T  7773534 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggattaaatctcttgttctttct 7773461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 353
Target Start/End: Original strand, 7771747 - 7771887
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactactt 312  Q
    |||||||| ||| ||||||||| ||||||||||||||||||| |||||| |||||||| |||||||||||||||  |  | |||||||   |||||||||    
T  7771747 atgatacaattgtaatatgggtgatgaaagaatacaaagtgcattcgtcatggactaaaactcttgttctttctgttgatgccattcctgatcactactt 7771846  T
Q  313 ttccccaatatgttgtacaaagagtggtgatattattggaa 353  Q
    |   || |||| || |||||| | |||||||||||||||||    
T  7771847 tcaacctatatattctacaaaaaatggtgatattattggaa 7771887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 7878735 - 7878807
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttc 285  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| ||| ||||||||||||||    
T  7878735 atgatacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggattaaaactcttgttctttc 7878807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 48705276 - 48705190
Alignment:
Q  31 taatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaactttt 120  Q
    |||||||||||||||||||||||||| |||||||||||||| |   ||  |||||||||| ||||||||||||||||||||| |||||||    
T  48705276 taatggggctattcattggttggcttatcgtcatgatttacga---aaggatgttattgttgcctttgatttaatggaaagggaactttt 48705190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 48864395 - 48864457
Alignment:
Q  221 gttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 283  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  48864395 gttgaaatatgggtgatgaaagaatacaaagtgcattcgtcttggactaagattcttgttctt 48864457  T

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Target: chr4; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 189
Target Start/End: Original strand, 48861418 - 48861589
Alignment:
Q  25 gctttttaatggggctattcattggttggcttttcgtcatgatttaccaat---gaataatgttattgtggcctttgatttaat----ggaaaggaaact 117  Q
    ||||||||||||| |||||||||  ||| |||||| || ||||||| ||||   ||  ||||||||||| || |||||||||||    ||||| ||||||    
T  48861418 gctttttaatgggactattcattaattgacttttcatcgtgatttatcaatatcgatgaatgttattgttgcatttgatttaatatatggaaaagaaact 48861517  T
Q  118 tttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatt 189  Q
    ||||||| ||||||| |   || ||||| ||||||||||||| ||||| |||||||||||||| ||| ||||    
T  48861518 tttagagatgtcttttctccataattttgaccatgaacctacatattgtgatttgtgggtattaagaaaatt 48861589  T

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Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 7908656 - 7908727
Alignment:
Q  215 gatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 286  Q
    |||||| ||||||||||||| ||||||||||||||||||| ||| ||||||| ||| |||||||||||||||    
T  7908656 gatacacttgaaatatgggtgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttct 7908727  T

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Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 37826905 - 37826632
Alignment:
Q  16 agtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaa 115  Q
    ||||||||| || || |||||||| |||||||||||  ||| ||||| ||||| |||| || ||    ||||||| |||||| |||||||||||||||||    
T  37826905 agtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatc---ttattgttgcctttaatttaatggaaaggaaa 37826809  T
Q  116 cttttagagttgtc--tt----tgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgg 209  Q
    || |||||| |  |  ||    | || ||||||||| || |||| ||| | ||||  | ||||||||||||| |||||||||| ||| ||||||||||||    
T  37826808 ctgttagagatacccgttccagttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttcttagtctatgggccatgg 37826709  T
Q  210 ggg------atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgtt 280  Q
    |        || ||||| || || || |||| ||||||||||||||| ||| |||||||||||||||||||||||||    
T  37826708 gcagttataatcatacacttaaattacgggtgatgaaagaatacaaactgcattcgtcttggactaagactcttgtt 37826632  T

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Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 304
Target Start/End: Original strand, 48861636 - 48861731
Alignment:
Q  209 ggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccact 304  Q
    |||||||||||| ||||||||||||| || |||||||||||||||| || |||||||||||| ||| ||    |||||| ||||||||||||||||    
T  48861636 ggggatgatacatttgaaatatgggtaataaaagaatacaaagtgcatttgtcttggactaatactatttccttttcttttagttccattcccact 48861731  T

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Target: chr4; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 387
Target Start/End: Original strand, 48870915 - 48871086
Alignment:
Q  216 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttc 315  Q
    ||||| ||||||| ||||| ||||| ||||||||||||   ||||||||||| ||||||||||||||||||  |  |  |||| ||  | | | ||||||    
T  48870915 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttc 48871014  T
Q  316 cccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||| | || |||||||| ||||||||||||||||||    || ||| || |||||||||||||||||||||    
T  48871015 cccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatga 48871086  T

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Target: chr4; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 387
Target Start/End: Original strand, 48876219 - 48876390
Alignment:
Q  216 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttc 315  Q
    ||||| ||||||| ||||| ||||| ||||||||||||   ||||||||||| ||||||||||||||||||  |  |  |||| ||  | | | ||||||    
T  48876219 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttc 48876318  T
Q  316 cccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||| | || |||||||| ||||||||||||||||||    || ||| || |||||||||||||||||||||    
T  48876319 cccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatga 48876390  T

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Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 7765994 - 7766064
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 283  Q
    |||||||| ||||||||||||| ||||||||||||||||||  |||||| ||||||||||| |||||||||    
T  7765994 atgatacaattgaaatatgggtgatgaaagaatacaaagtgtattcgtcatggactaagacacttgttctt 7766064  T

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Target: chr4; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 7813838 - 7813902
Alignment:
Q  222 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 286  Q
    |||||||||||||  |||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  7813838 ttgaaatatgggtgttgaaagaatacaaagtgcattcgtcttggaataaaactcttgttctttct 7813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 45384595 - 45384531
Alignment:
Q  219 cagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 283  Q
    |||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||| |||||||    
T  45384595 cagttgaaatatgggtgatgaaagaatataaagtgcattcgtcttggacaaagactcgtgttctt 45384531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 270
Target Start/End: Original strand, 48903115 - 48903364
Alignment:
Q  21 ggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaactttt 120  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||   ||  || ||||||||||| ||||||||||||||| |||   | |||||    
T  48903115 ggtcgctctttaatggggctattcattagttggcttttcatcatgattt---aagaaagaatgttattgttgcctttgatttaatgaaaaaagacctttt 48903211  T
Q  121 agagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgg---gggatgat 217  Q
     ||| |  || | ||   |||| |  || ||||| ||||  | || ||||| ||||||||| |||||||||| ||  |||||||  |||     ||| ||    
T  48903212 tgagattcctctcccacttgatgtggactatgaatctacaaagtgtgatttatgggtatttggagaatttcttagcctatgggctttggattacgataat 48903311  T
Q  218 acagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaa 270  Q
    | | ||||||||||||| ||||||||||||||||||| || ||||||||||||    
T  48903312 aaatttgaaatatgggtgatgaaagaatacaaagtgcatttgtcttggactaa 48903364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 387
Target Start/End: Original strand, 48886601 - 48886772
Alignment:
Q  216 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttc 315  Q
    ||||| ||||||| ||||| ||||| ||||||||||||   ||||||||||| ||||||||||||||||||  |  |  |||| |   | | | ||||||    
T  48886601 atacaattgaaatgtgggtgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttctgatgagtccttttc 48886700  T
Q  316 cccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||| | || |||||||| ||||||||||||||||||    || ||| || |||||||||||||||||||||    
T  48886701 cccattgtgctgtacaaaaagtggtgatattattggagcacatagtggtattggattggtgaagtatgatga 48886772  T

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Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 7786816 - 7786886
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 283  Q
    |||||||| ||||||||||||| |||||||||||||| |||| ||  ||||||| ||||||||||||||||    
T  7786816 atgatacaattgaaatatgggtgatgaaagaatacaacgtgcatttatcttggaataagactcttgttctt 7786886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 279
Target Start/End: Complemental strand, 48156262 - 48156072
Alignment:
Q  95 tttgatttaatggaaaggaaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaa 194  Q
    ||||||||||||||  |||||||||||||| || |||| || |||| |||| |||||  | ||    ||||  |||||||||||||| |||||||||| |    
T  48156262 tttgatttaatggatcggaaacttttagagatgccttttcctgatggttttcaccatacaactgataattgtaatttgtgggtatttggagaatttctca 48156163  T
Q  195 gtatatgggccatgg---ggg---atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
    || |||||||  | |   |||   |||| | ||||||||||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||    
T  48156162 gtttatgggctgttgattgggctaatgaaagagttgaaatatgggtgatgaacgaatacaaagtgcattcttcttggactaaaactcttgt 48156072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Original strand, 7800998 - 7801062
Alignment:
Q  222 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 286  Q
    |||||||||||||  ||||||| |||||||||| ||||||||||| ||| |||||||||||||||    
T  7800998 ttgaaatatgggtgttgaaagattacaaagtgcattcgtcttggaataaaactcttgttctttct 7801062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 387
Target Start/End: Original strand, 48898898 - 48899266
Alignment:
Q  31 taatggggctattcattggttggcttttcgtcatgatttac--caatga----ataatgttattgtggcctttgatttaatggaaaggaaacttttagag 124  Q
    ||||||||||||||||||||||||||||| || |||||| |  | |||     ||||||| ||||| ||||||||||||| |||||||||||| ||||||    
T  48898898 taatggggctattcattggttggcttttcatcgtgatttccatccatggtatgataatgtcattgttgcctttgatttaacggaaaggaaactgttagag 48898997  T
Q  125 ttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggc--ca----tgggggatgata 218  Q
     |||||   || ||||||||  | |||   |||    |||| | ||||||||| ||| |||| ||| | |||||||||||  ||      |   ||||||    
T  48898998 atgtctcctccagatgatttggaacatattcctcaggattgtggtttgtgggtctttggagattttttcagtatatgggctgcaaattatgctaatgata 48899097  T
Q  219 cagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttcccc 318  Q
    |||||||||||||||| ||||||||||| |||||    || ||||||||   ||||||||||||| ||  |  |  ||||||||||   ||||||| |||    
T  48899098 cagttgaaatatgggtgatgaaagaatataaagtaaaatcctcttggacagtgactcttgttcttcctattgatggcattcccactatgtacttttaccc 48899197  T
Q  319 aatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    | | || |||||||| |||||  ||||||||||||  ||||||||   |||||||||||||||||||||    
T  48899198 attgtgctgtacaaaaagtggctatattattggaacagatggtgaatttggattggtgaagtatgatga 48899266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 50666667 - 50666734
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgtt 280  Q
    |||||||| ||||| ||||||| ||| ||||||||||||||| ||| ||||||||||| |||||||||    
T  50666667 atgatacaattgaattatgggtgatgtaagaatacaaagtgcattcatcttggactaaaactcttgtt 50666734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 213 - 279
Target Start/End: Complemental strand, 7237452 - 7237386
Alignment:
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
    |||||||| ||| ||||||||| ||||||||||||||| ||| ||||| ||||||||| ||||||||    
T  7237452 atgatacaattgtaatatgggtgatgaaagaatacaaaatgcattcgttttggactaaaactcttgt 7237386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 50250667 - 50250626
Alignment:
Q  29 tttaatggggctattcattggttggcttttcgtcatgattta 70  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  50250667 tttaatggggctattcattggttggcttttcgttatgattta 50250626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 7773724 - 7773641
Alignment:
Q  29 tttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaa 115  Q
    ||||||||||||||||||||||||||||| |||| ||||||||    |   ||||| |||||  |||||||||||||||||||||||    
T  7773724 tttaatggggctattcattggttggctttgcgtcgtgatttacgttgg---aatgtaattgtttcctttgatttaatggaaaggaaa 7773641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 49048464 - 49048361
Alignment:
Q  36 gggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagttgtctttgcc 135  Q
    |||||||||| ||||||||||||| || ||||||| | ||||||   |||||||| ||||||||||||| |||||| || ||| ||||  ||||| ||||    
T  49048464 gggctattcactggttggcttttcatcttgatttatcgatgaat---gttattgttgcctttgatttaacggaaagaaaccttgtagatatgtctctgcc 49048368  T
Q  136 ggatgat 142  Q
     ||||||    
T  49048367 agatgat 49048361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 48170476 - 48170419
Alignment:
Q  13 cagagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgattta 70  Q
    |||||||||||| |||||||| |||| |||||||||||| |||| || ||||||||||    
T  48170476 cagagtagggtcactttttaacggggttattcattggttagcttatcatcatgattta 48170419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 45384730 - 45384630
Alignment:
Q  96 ttgatttaatggaaaggaaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaag 195  Q
    |||||||||| |||| |||||||||  |  ||  |||||| ||||| ||| ||| |||||||||| |||| | ||||||||||||| |||||||||| ||    
T  45384730 ttgatttaatcgaaatgaaacttttttatatgcatttgccagatgagtttaaccgtgaacctaccgattgtggtttgtgggtatttggagaatttctcag 45384631  T
Q  196 t 196  Q
    |    
T  45384630 t 45384630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 48863421 - 48863453
Alignment:
Q  35 ggggctattcattggttggcttttcgtcatgat 67  Q
    |||||||||||||||||||||||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgat 48863453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 49041038 - 49041006
Alignment:
Q  35 ggggctattcattggttggcttttcgtcatgat 67  Q
    |||||||||||||||||||||||||||||||||    
T  49041038 ggggctattcattggttggcttttcgtcatgat 49041006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 286
Target Start/End: Original strand, 48863571 - 48863690
Alignment:
Q  167 gatttgtgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttgga 266  Q
    ||||| ||||||||||||| || ||| ||| ||||||    ||||||| |||  ||||| |||||||| ||| ||||||||  ||||| ||| |||||||    
T  48863571 gatttatgggtatttagaggatctctcagtctatgggtttcgggggatcataaggttgacatatgggtgatggaagaatacggagtgcattcatcttgga 48863670  T
Q  267 ctaagactcttgttctttct 286  Q
     ||| |||||||| ||||||    
T  48863671 ttaaaactcttgtgctttct 48863690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 48891593 - 48891632
Alignment:
Q  18 tagggtcgctttttaatggggctattcattggttggcttt 57  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  48891593 tagggtcgcttgttaatggggctcttcattggttggcttt 48891632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 50669247 - 50669338
Alignment:
Q  29 tttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttaga 123  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||  || |  |  ||| ||||| ||||||||||| |||||||||||||| |||||    
T  50669247 tttaatgaggctatttattggttggcttttcgttatgattta--aaggtgt-ttgtcattgttgcctttgatttgatggaaaggaaactgttaga 50669338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 7823332 - 7823394
Alignment:
Q  224 gaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttct 286  Q
    |||||||||||  | ||||| |||||||||| || |||||||| ||| |||||||||||||||    
T  7823332 gaaatatgggtgtttaaagattacaaagtgcatttgtcttggaataaaactcttgttctttct 7823394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 7771563 - 7771604
Alignment:
Q  29 tttaatggggctattcattggttggcttttcgtcatgattta 70  Q
    |||||||||||||||||||||||||||| ||| | |||||||    
T  7771563 tttaatggggctattcattggttggcttatcgccgtgattta 7771604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 7790248 - 7790289
Alignment:
Q  29 tttaatggggctattcattggttggcttttcgtcatgattta 70  Q
    |||||||||||||||||||||||||||| ||| | |||||||    
T  7790248 tttaatggggctattcattggttggcttatcgccgtgattta 7790289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 7765802 - 7765842
Alignment:
Q  27 tttttaatggggctattcattggttggcttttcgtcatgat 67  Q
    |||||||||||||||||||||||||| |||  |||||||||    
T  7765802 tttttaatggggctattcattggttgtcttcgcgtcatgat 7765842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 48876026 - 48876062
Alignment:
Q  35 ggggctattcattggttggcttttcgtcatgatttac 71  Q
    |||||||||||||||||||||| |||| |||||||||    
T  48876026 ggggctattcattggttggcttatcgtgatgatttac 48876062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 50672860 - 50672908
Alignment:
Q  223 tgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaag 271  Q
    |||||||||||| |||||| |||||||| ||| |||||| |||||||||    
T  50672860 tgaaatatgggtgatgaaacaatacaaattgcattcgtcgtggactaag 50672908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 21015980 - 21016347
Alignment:
Q  17 gtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaac 116  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    |||||  | ||||||||||| || ||||| ||||    
T  21015980 gtagggtcggtttttaatggggctattcattggttggcttttcgtcatgatttatcaatgaaa---gttatcattgcctttgatttgatagaaagaaaac 21016076  T
Q  117 ttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatga 216  Q
    |||| ||  ||||||||||||||||| |  | ||||||||||  ||||| ||||||||||||||  | |||||| | ||| ||||| | ||||    |||    
T  21016077 ttttcgacatgtctttgccggatgatatggaacatgaacctatatattgtgatttgtgggtattcggtgaatttttgagtgtatggactatggatagtga 21016176  T
Q  217 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttcc 316  Q
    || ||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||  | | |||  |  |  |||||||||||  || || ||     
T  21016177 tatagttgaaatatgggttatgaaagaatacaaagtacattcgtcttggactaagactcttactttctctattgatgacattcccactcgttatttctct 21016276  T
Q  317 ccaatatgttgtacaaagagtggtgatattattggaatggatggtgatag-tggattggtgaagtatgatga 387  Q
    ||||||||||||||||| |||||||||||||||||||  |||||| | || ||||||||||| |||||||||    
T  21016277 ccaatatgttgtacaaaaagtggtgatattattggaacagatggt-acagctggattggtgaggtatgatga 21016347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 21979325 - 21979267
Alignment:
Q  225 aaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 283  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||  |||||||||    
T  21979325 aaatatgggtgatgaaagaatacaaagtgcgttcctcttggaataagaaacttgttctt 21979267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 21979527 - 21979439
Alignment:
Q  29 tttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaactttt 120  Q
    |||||| ||||||||||||||||| |||||||  |||||||| |  ||  |   |||||||| |||||||||||||| ||||||||||||||    
T  21979527 tttaatagggctattcattggttgacttttcggtatgatttatctgtgttt---gttattgttgcctttgatttaatagaaaggaaactttt 21979439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 11005830 - 11005571
Alignment:
Q  17 gtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaac 116  Q
    |||||| |||||||||||||| |||||||||||||  ||||||| ||||||||  ||||| ||   |||||||| | |||||||||| ||||||||||||    
T  11005830 gtagggacgctttttaatgggactattcattggttctcttttcgccatgatttgtcaatggat---gttattgttggctttgatttagtggaaaggaaac 11005734  T
Q  117 ttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatga 216  Q
    |||||||| || |||| ||  ||| |||| | ||||||||||   |||| ||||||||| ||||| |||||||||| ||| ||||||| |||||||||||    
T  11005733 ttttagagatgccttttccatatggttttgatcatgaacctatagattgtgatttgtggatatttggagaatttcttagtctatgggctatgggggatga 11005634  T
Q  217 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
     ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  11005633 aacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaaggctcttgt 11005571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 386
Target Start/End: Complemental strand, 11015394 - 11015027
Alignment:
Q  16 agtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaa 115  Q
    |||||||  ||| ||||||||| |||||||||||||  ||||||| ||||||||| ||||| ||   |||||||| | |||||||||| |||||||||||    
T  11015394 agtagggatgctctttaatgggactattcattggttctcttttcgccatgatttatcaatggat---gttattgttggctttgatttagtggaaaggaaa 11015298  T
Q  116 cttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatg 215  Q
    ||||| ||| ||  ||| || |||| |||| || |||||||||   |||| ||||||||| ||||| |||||||||||||| ||||||| |||| |||||    
T  11015297 cttttggagatgcattttccagatggttttgactatgaacctatagattgtgatttgtggatatttggagaatttctaagtctatgggctatggaggatg 11015198  T
Q  216 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttc 315  Q
      ||||||||||||||||| ||||||||||||||||||| ||||||||||  ||| |||||||| || |||  |  |  |||| ||| | | || | | |    
T  11015197 gaacagttgaaatatgggttatgaaagaatacaaagtgcattcgtcttgggttaaaactcttgtcctatctattgatgacatttccattgagtattatcc 11015098  T
Q  316 cccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatg 386  Q
    ||||||||| | |||||| ||||||| |||||||||||   |||||| | ||| |||||| ||||||||||    
T  11015097 cccaatatgctctacaaaaagtggtggtattattggaacaaatggtggtggtgaattggtaaagtatgatg 11015027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 11024406 - 11024146
Alignment:
Q  16 agtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaa 115  Q
    ||||||| | || |||||||||  ||||||||||||  |||||||  |||||||| ||||| ||   |||||| | |||||||||||| |||||||| ||    
T  11024406 agtagggacactctttaatgggaatattcattggttctcttttcgcaatgatttatcaatggat---gttattattgcctttgatttagtggaaagggaa 11024310  T
Q  116 cttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatg 215  Q
    ||||| ||| || |||| || |||| |||| | ||||||||||   |||| ||||||||| ||||| |||||||||| ||| ||||||| ||||||| ||    
T  11024309 cttttggagatgccttttccagatggttttgatcatgaacctatggattgtgatttgtggatatttggagaatttctcagtctatgggctatggggggtg 11024210  T
Q  216 atacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
      ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  11024209 taacaattgaaatatgggttatgaaagaatacaaagtgcattcgtcttggactaagactcttgt 11024146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 14 - 387
Target Start/End: Complemental strand, 47451811 - 47451435
Alignment:
Q  14 agagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaagga 113  Q
    |||||||||| ||| || |||||||||||| ||||||||||||||||||||||| || | ||||||   |||||||  || ||||||||||||||||| |    
T  47451811 agagtagggtggctcttcaatggggctatttattggttggcttttcgtcatgatatatccatgaat---gttattgctgcatttgatttaatggaaagaa 47451715  T
Q  114 aacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgg---- 209  Q
    || |||||||  ||  |||||| ||||||||| |||||||||||||| |||| | ||||||||||||| |||||||||| ||| || |||   |||        
T  47451714 aatttttagatgtgaatttgccagatgattttgaccatgaacctaccaattgtggtttgtgggtatttggagaatttcttagtctaagggttctggattg 47451615  T
Q  210 --gggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcac 307  Q
         |||||| ||||||||||||||| |||||||||||||||||   ||||||||||   ||||||||||||||| ||  |  |  ||||||| ||||     
T  47451614 tcataatgatatagttgaaatatgggtgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatggcattccctctcag 47451515  T
Q  308 tacttttccccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    ||||||| |||  ||   | |||||| |||||||||||||||||||  |||| |||||  |||||||| |||||| ||||    
T  47451514 tacttttaccccttaacctctacaaaaagtggtgatattattggaacagatgatgataccggattggttaagtataatga 47451435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 4031815 - 4031577
Alignment:
Q  13 cagagtagggtcgctttttaatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaagg 112  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||||||||| |   ||  |||||||| || ||||||||||||| ||||||     
T  4031815 cagagtagggtcgctttttagtggatctattcattggttggcttttcgtcatgatttatc---gataaatgttatcgttgcctttgatttaacggaaaga 4031719  T
Q  113 aaacttttagagttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatggggg 212  Q
    |||||||||             | |||||||||||   ||| || |   |||| ||||||||||||||||||| |||| | ||| |     || ||||||    
T  4031718 aaactttta------------acagatgatttttattgtgatcccaaaaattgtgatttgtgggtatttagaggatttgttagtct-----ccgtggggg 4031636  T
Q  213 atgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaag 271  Q
    ||| || ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||    
T  4031635 atgttatagttgaaatatgggttatgaaagaatacaaaatgcattcgtcttggactaag 4031577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 387
Target Start/End: Complemental strand, 4030402 - 4030323
Alignment:
Q  308 tacttttccccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||||||||||||| || | |||||  |||||||||||||||||||   |||||| || || ||||||||||||||||||    
T  4030402 tacttttccccaatgtgctctacaataagtggtgatattattggaacatatggtggtactgaattggtgaagtatgatga 4030323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 12200703 - 12200760
Alignment:
Q  222 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
    ||||||||||||  ||||||  ||||||| |||||||||||||||| |||||||||||    
T  12200703 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12200760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 12445131 - 12445188
Alignment:
Q  222 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
    ||||||||||||  ||||||  ||||||| |||||||||||||||| |||||||||||    
T  12445131 ttgaaatatgggcgatgaaaatatacaaactgcgttcgtcttggaccaagactcttgt 12445188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 15349244 - 15349305
Alignment:
Q  222 ttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 283  Q
    ||||||||||||| ||||||||||||||||||   || |||||||| |||| ||||||||||    
T  15349244 ttgaaatatgggtgatgaaagaatacaaagtgaactcttcttggacaaagattcttgttctt 15349305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 15349349 - 15349409
Alignment:
Q  327 gtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    ||||||||||||||||||||||||||||  ||| || |  || ||||||||||||||||||    
T  15349349 gtacaaagagtggtgatattattggaataaatgttggtgttgaattggtgaagtatgatga 15349409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 4962131 - 4962089
Alignment:
Q  310 cttttccccaatatgttgtacaaagagtggtgatattattgga 352  Q
    |||||||||||||| || |||||| ||||||||||||||||||    
T  4962131 cttttccccaatatattctacaaaaagtggtgatattattgga 4962089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 4962221 - 4962161
Alignment:
Q  220 agttgaaatatgggtcatgaaagaatacaaagtgcgt---tcgtcttggactaagactctt 277  Q
    ||||||||||||||| ||||||||||||||| ||| |   ||||| |||||||||||||||    
T  4962221 agttgaaatatgggtgatgaaagaatacaaactgcattcgtcgtcgtggactaagactctt 4962161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 15349044 - 15349082
Alignment:
Q  31 taatggggctattcattggttggcttttcgtcatgattt 69  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  15349044 taatggggctattcattggttggcttttcatcgtgattt 15349082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 12195681 - 12195742
Alignment:
Q  218 acagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
    ||||||||||||||||  |||||||||||||||   |  || ||||||||||||||||||||    
T  12195681 acagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12195742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 12440109 - 12440170
Alignment:
Q  218 acagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgt 279  Q
    ||||||||||||||||  |||||||||||||||   |  || ||||||||||||||||||||    
T  12440109 acagttgaaatatgggagatgaaagaatacaaacaacaatcatcttggactaagactcttgt 12440170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 12200558 - 12200590
Alignment:
Q  83 gttattgtggcctttgatttaatggaaaggaaa 115  Q
    |||||||| ||||||||||||||||||||||||    
T  12200558 gttattgttgcctttgatttaatggaaaggaaa 12200590  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 12200788 - 12200860
Alignment:
Q  310 cttttccccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtat 382  Q
    ||||||||| ||||  | |||||| |||||||||||||||||||  ||| ||| |  ||||||||||||||||    
T  12200788 cttttcccctatatactctacaaaaagtggtgatattattggaactgatagtggtcatggattggtgaagtat 12200860  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 12444986 - 12445018
Alignment:
Q  83 gttattgtggcctttgatttaatggaaaggaaa 115  Q
    |||||||| ||||||||||||||||||||||||    
T  12444986 gttattgttgcctttgatttaatggaaaggaaa 12445018  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 382
Target Start/End: Original strand, 12445216 - 12445288
Alignment:
Q  310 cttttccccaatatgttgtacaaagagtggtgatattattggaatggatggtgatagtggattggtgaagtat 382  Q
    ||||||||| ||||  | |||||| |||||||||||||||||||  ||| ||| |  ||||||||||||||||    
T  12445216 cttttcccctatatactctacaaaaagtggtgatattattggaactgatagtggtcatggattggtgaagtat 12445288  T

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Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 345
Target Start/End: Original strand, 29688485 - 29688613
Alignment:
Q  217 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactacttttcc 316  Q
    |||||||||||||||||| |||||| ||||||| ||||  ||||||||||| |||||||| |||||||||| | ||  |||||||| |||||||||||      
T  29688485 tacagttgaaatatgggtgatgaaaaaatacaatgtgcaatcgtcttggacaaagactctcgttctttcttttggtgacattcccattcactacttttgt 29688584  T
Q  317 ccaatatgttgtacaaagagtggtgatat 345  Q
    || | || ||||||||| |||||||||||    
T  29688585 ccgaaatattgtacaaaaagtggtgatat 29688613  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 42562082 - 42561972
Alignment:
Q  173 tgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaaga 272  Q
    ||||||||||||| |||||| ||| |||||    || |||| ||||  ||||| |||||||| ||||||||||||||||||| ||| |||||||||||||    
T  42562082 tgggtatttagaggatttctcagtctatggattttgagggacgataatgttgatatatgggtgatgaaagaatacaaagtgcattcatcttggactaaga 42561983  T
Q  273 ctcttgttctt 283  Q
     ||||||||||    
T  42561982 ttcttgttctt 42561972  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 9120058 - 9120182
Alignment:
Q  162 attgcgatttgtgggtatttagagaatttctaagtatatgggccatggggg------atgatacagttgaaatatgggtcatgaaagaatacaaagtgcg 255  Q
    |||| ||| ||||||||||| |||||||||| ||||||||||| ||||         |||||||||||||||||||||| |||||||||||||||||||     
T  9120058 attgtgatgtgtgggtatttggagaatttctcagtatatgggctatggattttgctaatgatacagttgaaatatgggtgatgaaagaatacaaagtgca 9120157  T
Q  256 ttcgtcttggactaagactcttgtt 280  Q
    ||| |||||||  || |||||||||    
T  9120158 ttcctcttggaagaaaactcttgtt 9120182  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 265
Target Start/End: Original strand, 179217 - 179462
Alignment:
Q  26 ctttttaatggggctattcattggttggcttttcgtcatgat---ttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttag 122  Q
    ||||||||||||||||||||||||||  ||||||||||||||   |||| |||| ||    ||||| | ||||||||| ||||  ||||| ||||||| |    
T  179217 ctttttaatggggctattcattggttctcttttcgtcatgatcatttacaaatggatc---ttattcttgcctttgatctaatcaaaagggaactttttg 179313  T
Q  123 agttgtctttgccggatgatttttaccatgaacctacctattgcgatttgtgggtatttagagaatttctaagtatatgggccatgggggatga------ 216  Q
    || |  || | ||   |||| || || ||||| ||||  |||| ||| | ||||||||| || ||||||| ||||||||||| ||||   ||||          
T  179314 agattcctctcccaattgatattgactatgaagctacaaattgtgatgtatgggtatttggacaatttctcagtatatgggctatggattatgataatga 179413  T
Q  217 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttgg 265  Q
    |||||||||||||||||| ||||||||||||||||||| ||| ||||||    
T  179414 tacagttgaaatatgggtgatgaaagaatacaaagtgcattcatcttgg 179462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 127
Target Start/End: Original strand, 29696401 - 29696493
Alignment:
Q  32 aatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagttg 127  Q
    |||||||||||||| ||||||||||||||| ||||| || |||||  |   |||||||| |||||| ||||||| |||||||||||| ||||||||    
T  29696401 aatggggctattcactggttggcttttcgtaatgatatatcaatgcct---gttattgttgcctttcatttaattgaaaggaaacttctagagttg 29696493  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 29688297 - 29688397
Alignment:
Q  32 aatggggctattcattggttggcttttcgtcatgatttaccaatgaataatgttattgtggcctttgatttaatggaaaggaaacttttagagttgtctt 131  Q
    ||||||| |||||| ||||||||||||| | |||||  | ||||||||   |||||||| |  ||| |||||| ||||||||||||| |||||||| |||    
T  29688297 aatggggttattcactggttggcttttcattatgatagatcaatgaat---gttattgttggatttcatttaacggaaaggaaacttatagagttgcctt 29688393  T
Q  132 tgcc 135  Q
    ||||    
T  29688394 tgcc 29688397  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 9119915 - 9119963
Alignment:
Q  19 agggtcgctttttaatggggctattcattggttggcttttcgtcatgat 67  Q
    |||||| ||||| |||||| ||||||||||||| |||||||||||||||    
T  9119915 agggtctcttttcaatgggtctattcattggttcgcttttcgtcatgat 9119963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 217 - 280
Target Start/End: Complemental strand, 29712146 - 29712083
Alignment:
Q  217 tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgtt 280  Q
    |||||||||||||||||| ||| || ||||||| |||   || |||||||||||||||||||||    
T  29712146 tacagttgaaatatgggtgatggaaaaatacaatgtgacatcttcttggactaagactcttgtt 29712083  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 212 - 354
Target Start/End: Original strand, 48884175 - 48884317
Alignment:
Q  212 gatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctttcttgtagttccattcccactcactact 311  Q
    ||||||| ||||||||||| ||| ||||||||||||||||||| |  |||||||||||||||||||||||||   |    |  |||||| ||||  | ||    
T  48884175 gatgataaagttgaaatataggtgatgaaagaatacaaagtgcatatgtcttggactaagactcttgttcttcaattacatgtcattcctactcgatgct 48884274  T
Q  312 tttccccaatatgttgtacaaagagtggtgatattattggaat 354  Q
    ||||||| ||||| | |||||| ||||||||||||||||||||    
T  48884275 tttcccctatatggtttacaaaaagtggtgatattattggaat 48884317  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 173 - 282
Target Start/End: Original strand, 24367477 - 24367586
Alignment:
Q  173 tgggtatttagagaatttctaagtatatgggccatgggggatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaaga 272  Q
    ||||||||||||| |||||| ||| ||||||   || ||   |||||| || | |||||||| ||| ||||||||||||||| ||||||||||||||| |    
T  24367477 tgggtatttagaggatttctcagtctatgggttttgaggagagatacactttatatatgggtaatggaagaatacaaagtgcattcgtcttggactaaaa 24367576  T
Q  273 ctcttgttct 282  Q
    ||||||||||    
T  24367577 ctcttgttct 24367586  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 24340720 - 24340833
Alignment:
Q  173 tgggtatttagagaatttctaagtatatgggccatgggggatga---tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 269  Q
    ||||||| ||||| |||||||||| ||||||  |||| ||||||   ||| ||||| || ||||| ||||||||||| |||||||  || ||||||||||    
T  24340720 tgggtatgtagaggatttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggacta 24340819  T
Q  270 agactcttgttctt 283  Q
    | ||||||||||||    
T  24340820 aaactcttgttctt 24340833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 283
Target Start/End: Original strand, 24353085 - 24353198
Alignment:
Q  173 tgggtatttagagaatttctaagtatatgggccatgggggatga---tacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 269  Q
    ||||||| ||||| |||||||||| ||||||  |||| ||||||   ||| ||||| || ||||| ||||||||||| |||||||  || ||||||||||    
T  24353085 tgggtatgtagaggatttctaagtctatgggttatggtggatgaggatacggttgatatctgggtaatgaaagaatataaagtgcagtcatcttggacta 24353184  T
Q  270 agactcttgttctt 283  Q
    | ||||||||||||    
T  24353185 aaactcttgttctt 24353198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 24310525 - 24310635
Alignment:
Q  173 tgggtatttagagaatttctaagtatatgggccatgggg---gatgatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggacta 269  Q
    ||||||||||||| |||||| ||| ||||||  ||| ||   || |||| |||||| |||||||| |||||||||||||||||||  || ||||||| ||    
T  24310525 tgggtatttagaggatttctcagtctatgggttatgagggacgaggataaagttgatatatgggtgatgaaagaatacaaagtgcagtcttcttggagta 24310624  T
Q  270 agactcttgtt 280  Q
    | |||||||||    
T  24310625 aaactcttgtt 24310635  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 24416132 - 24416199
Alignment:
Q  215 gatacagttgaaatatgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttct 282  Q
    |||| |||||| |||||||| |||||||||||||||| ||  || ||||||||||| |||||||||||    
T  24416132 gatagagttgatatatgggtgatgaaagaatacaaagggcagtcatcttggactaaaactcttgttct 24416199  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 24323139 - 24323192
Alignment:
Q  230 tgggtcatgaaagaatacaaagtgcgttcgtcttggactaagactcttgttctt 283  Q
    ||||| |||||||||||||||||||  || |||| |||||| ||||||||||||    
T  24323139 tgggtgatgaaagaatacaaagtgcagtcatcttcgactaaaactcttgttctt 24323192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 29350897 - 29350948
Alignment:
Q  336 gtggtgatattattggaatggatggtgatagtggattggtgaagtatgatga 387  Q
    |||||||||||||||||| |||||||| || || ||||||||||||| ||||    
T  29350897 gtggtgatattattggaacggatggtggtactgaattggtgaagtattatga 29350948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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