View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13834_high_2 (Length: 469)
Name: NF13834_high_2
Description: NF13834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13834_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 2660933 - 2661175
Alignment:
| Q |
15 |
aacctgtgaatttcatttcaactggaaattttatgccggataaggataatgttgatgaggatttgaaagagcaggatgatggtgaagataggcctggttt |
114 |
Q |
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| T |
2660933 |
aaccagtgaatttcatttcaactggaaattttatgccggataaggataatgttgatgaggatttgaaagagcaggatgatggtgaagataggcctggttt |
2661032 |
T |
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| Q |
115 |
agggttaggttttgggtcggctagtgtatcggggtctggtctaggatttaattctggtcgtggtgtgaatggttcagataggaatgatgatgaatctgat |
214 |
Q |
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| T |
2661033 |
tgggttaggttttgggtcggctagtgtatcggggtctggtctaggatttaattctggtcgtggtgtgaatggttcagataggaatgatgatgaatctgat |
2661132 |
T |
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| Q |
215 |
gagaatgataatcgggatgataaatttttgcctactgcgtttg |
257 |
Q |
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| T |
2661133 |
gagaatgataatcgggatgataaatttttgcctactgcgtttg |
2661175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 332 - 469
Target Start/End: Original strand, 2661253 - 2661390
Alignment:
| Q |
332 |
ccggggatgggtttaggtcaggaggggtctgtggatgttgggaaattcgagagtcatacgaagggaattggaatgaagctgcttgagaagatgggttata |
431 |
Q |
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| T |
2661253 |
ccggggatgggtttaggtcaggaggggtctgtggatgttgggaaattcgagagtcatacaaagggaattggaatgaagctgcttgagaagatgggttata |
2661352 |
T |
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| Q |
432 |
aagggggtggtcttgggaagaatgagcagggtatttta |
469 |
Q |
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| T |
2661353 |
aagggggtggtcttgggaagaatgagcagggtatttta |
2661390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 340 - 465
Target Start/End: Original strand, 25951995 - 25952117
Alignment:
| Q |
340 |
gggtttaggtcaggaggggtctgtggatgttgggaaattcgagagtcatacgaagggaattggaatgaagctgcttgagaagatgggttataaagggggt |
439 |
Q |
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| T |
25951995 |
gggtctaggtcaggagggatcagttgatgttgggaaattcaagagttata---acggaatgggaatgaagctgatggagaaaatgggttataaaggaggt |
25952091 |
T |
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| Q |
440 |
ggtcttgggaagaatgagcagggtat |
465 |
Q |
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| T |
25952092 |
ggtcttgggaagaatgagcagggtat |
25952117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 345 - 465
Target Start/End: Original strand, 25945404 - 25945521
Alignment:
| Q |
345 |
taggtcaggaggggtctgtggatgttgggaaattcgagagtcatacgaagggaattggaatgaagctgcttgagaagatgggttataaagggggtggtct |
444 |
Q |
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||||||| |||| || ||||||||||||||||| |||| | ||| || ||||| |||||||||||| | ||||| |||||||||||||| |||||||| |
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| T |
25945404 |
taggtcacgaggaatcagtggatgttgggaaattggagaat--tac-aacggaatgggaatgaagctgatggagaaaatgggttataaaggaggtggtct |
25945500 |
T |
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| Q |
445 |
tgggaagaatgagcagggtat |
465 |
Q |
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| T |
25945501 |
tgggaagaatgagcagggtat |
25945521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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