View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13834_high_4 (Length: 350)
Name: NF13834_high_4
Description: NF13834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13834_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 36 - 173
Target Start/End: Complemental strand, 2661390 - 2661253
Alignment:
| Q |
36 |
taaaataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattcccttcgtatgactctcgaatttccca |
135 |
Q |
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| T |
2661390 |
taaaataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattccctttgtatgactctcgaatttccca |
2661291 |
T |
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| Q |
136 |
acatccacagacccctcctgacctaatcccatccccgg |
173 |
Q |
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| T |
2661290 |
acatccacagacccctcctgacctaaacccatccccgg |
2661253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 248 - 337
Target Start/End: Complemental strand, 2661175 - 2661086
Alignment:
| Q |
248 |
caaacgcagtaggcaaaaatttatcatcccgattatcattctcatcagattcatcatcattcctatctgaaccattcacaccacgaccag |
337 |
Q |
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| T |
2661175 |
caaacgcagtaggcaaaaatttatcatcccgattatcattctcatcagattcatcatcattcctatctgaaccattcacaccacgaccag |
2661086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 25952117 - 25952000
Alignment:
| Q |
40 |
ataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattcccttcgtatgactctcgaatttcccaacat |
139 |
Q |
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| T |
25952117 |
ataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgt---tataactcttgaatttcccaacat |
25952021 |
T |
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| Q |
140 |
ccacagacccctcctgaccta |
160 |
Q |
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| T |
25952020 |
caactgatccctcctgaccta |
25952000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 40 - 160
Target Start/End: Complemental strand, 25945521 - 25945404
Alignment:
| Q |
40 |
ataccctgctcattcttcccaagaccaccccctttataacccatcttctcaagcagcttcattccaattcccttcgtatgactctcgaatttcccaacat |
139 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||||||| ||||| || ||| | |||| ||||||||||||| |
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| T |
25945521 |
ataccctgctcattcttcccaagaccacctcctttataacccattttctccatcagcttcattcccattccgtt-gta--attctccaatttcccaacat |
25945425 |
T |
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| Q |
140 |
ccacagacccctcctgaccta |
160 |
Q |
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|||| || |||| ||||||| |
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| T |
25945424 |
ccactgattcctcgtgaccta |
25945404 |
T |
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