View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13834_high_5 (Length: 329)
Name: NF13834_high_5
Description: NF13834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13834_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 22195264 - 22195570
Alignment:
| Q |
21 |
acatcatcatctagtgtgattctatatgttattcactatctggttgatatatagcatcaatacgtgatatttaaggtgtgtcccgtgtccacaccttcgg |
120 |
Q |
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| T |
22195264 |
acatgatcatctagtgtgattctatatgttattcactatctggttgatatatagcatcaatacgtgatatttaaggtgtgtcccatgtccacaccttcgg |
22195363 |
T |
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| Q |
121 |
tgtagagacatttaatcacttccatcttctcaaattattttcagtgtctacttgtcactgtcatggttgtatcctgtttctttatcgatggcagtgcttc |
220 |
Q |
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| T |
22195364 |
tgtagagacatttaatcacttccatcttctcaaattattttcagcgtctacttgtcactattatggttgtgtcctgtgtctttatcgatggcattgcttc |
22195463 |
T |
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| Q |
221 |
atagtttgatattgttcctaaaatatttttgctcgtggctaaggatacagtttatatctaaggatacatattttgttatcgattcaggggatgttccacg |
320 |
Q |
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| T |
22195464 |
atagtttgatattgttcccaaaata--tttgctcgtggctaaggatacagtttatatctaaggatacatattttgttatcgattcaggggatgttccacg |
22195561 |
T |
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| Q |
321 |
ggttgatgg |
329 |
Q |
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| T |
22195562 |
ggttgatgg |
22195570 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 31864388 - 31864426
Alignment:
| Q |
129 |
catttaatcacttccatcttctcaaattattttcagtgt |
167 |
Q |
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| T |
31864388 |
catttaatcacatccattttctcaaattattttcagtgt |
31864426 |
T |
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