View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13834_low_1 (Length: 1090)

Name: NF13834_low_1
Description: NF13834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13834_low_1
NF13834_low_1
[»] chr1 (13 HSPs)
chr1 (16-1074)||(49546739-49547783)
chr1 (590-756)||(47872526-47872682)
chr1 (598-720)||(33857205-33857328)
chr1 (598-720)||(33923595-33923718)
chr1 (583-644)||(44261669-44261730)
chr1 (377-421)||(32123584-32123628)
chr1 (873-925)||(33856891-33856943)
chr1 (873-925)||(33923980-33924032)
chr1 (857-925)||(45191217-45191285)
chr1 (806-874)||(49444123-49444191)
chr1 (73-136)||(49443886-49443948)
chr1 (819-865)||(44261863-44261909)
chr1 (365-406)||(34141638-34141679)
[»] chr3 (7 HSPs)
chr3 (826-1060)||(14961355-14961593)
chr3 (377-420)||(21777206-21777249)
chr3 (383-421)||(42668172-42668210)
chr3 (873-918)||(14961269-14961314)
chr3 (372-417)||(35586173-35586218)
chr3 (538-653)||(14961756-14961874)
chr3 (370-421)||(42157733-42157784)
[»] chr5 (4 HSPs)
chr5 (370-420)||(1175862-1175912)
chr5 (370-420)||(12150688-12150738)
chr5 (354-423)||(13839473-13839540)
chr5 (371-417)||(33740020-33740066)
[»] chr8 (2 HSPs)
chr8 (365-416)||(32874844-32874894)
chr8 (377-420)||(39418173-39418216)
[»] chr7 (3 HSPs)
chr7 (378-421)||(13858445-13858488)
chr7 (370-419)||(7181389-7181438)
chr7 (352-420)||(45471832-45471900)
[»] chr4 (3 HSPs)
chr4 (583-626)||(55771061-55771104)
chr4 (583-626)||(55835295-55835338)
chr4 (365-419)||(56439290-56439344)
[»] chr2 (2 HSPs)
chr2 (365-419)||(5193176-5193229)
chr2 (365-415)||(38216438-38216488)


Alignment Details
Target: chr1 (Bit Score: 754; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 754; E-Value: 0
Query Start/End: Original strand, 16 - 1074
Target Start/End: Original strand, 49546739 - 49547783
Alignment:
Q  16 catcattccatagtatttcttccttaggtttaatggataatgagccnnnnnnnntatatgaactgaattaggaggaggatctgttaaaagaaaaggacaa 115  Q
    |||||||||||||||||||||| |||||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||| |||||    
T  49546739 catcattccatagtatttcttctttaggtttaatggataatgagccaaaaaaaaaatatgagctgaattaggaggaggatctgttaaaagaaaaagacaa 49546838  T
Q  116 atgaggaatcctgacataatgattacaatgtgggagtctcttgnnnnnnnc-ttatgatgatttattctt--aggcattgtttgtgattttggaggggag 212  Q
    |||||||||| |||||||||||||||||||||||||||||||          ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  49546839 atgaggaatcatgacataatgattacaatgtgggagtctctttttttttttgttatgatgatttattcttttaggcattgtttgtgattttggaggggag 49546938  T
Q  213 tgaatgactttgggtaaaaaaggaggaaagggaatggctttgaatagggggcttgtttttcattgcaacagaaaattccctcaaaatgggggaactaaaa 312  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  49546939 tgaatggctttgggtaaaaaaggaggaaagggaatggctttgaatagggggcttgtttttcattgcaacagaaaatccccttaaaatgggggaactaaaa 49547038  T
Q  313 atattgtactaaagagggtttcgtgaaatctatgttgtgtaataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547039 atattgtactaaagagggtttcgtgaaatctatgttgtgtaataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctac 49547138  T
Q  413 aaaaacactatnnnnnnnntgtgcaagatttctccaatttcccccctactcttcctcccctcgaaactctcagagtcttagttgctgttttttcaatcgt 512  Q
    |||||||||||        |||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49547139 aaaaacactataaaaaaaatgtggaagatttctccaatttcccctctactctccctcccctcgaaactctcagagtcttagttgctgttttttcaatcgt 49547238  T
Q  513 gaagttttcaaaatattttctggccgtaagacagtttttaccagtggaaattagtttccgaagtagatataatgcatgaacctctaacccctattttaat 612  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49547239 gaagttttcaaaatattttctggccgtaagacagtttttacccgtggaaattagttcccgaagtagatataatgcatgaacctctaacccctattttaat 49547338  T
Q  613 actccaaagatatagactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagtgacccaacttaatcc 712  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49547339 actccaaagatataaactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacagtgcagagtgacccaacttaatcc 49547438  T
Q  713 atcaattaattgcacaaagcttgatcaaattagtctctaaattaccacaaac---agtagaaatatatatacagcnnnnnnnnnnnnggtcataataact 809  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| || ||   |||||||||||||||||||               |||||||||||    
T  49547439 atcaattaattgcacaaagtttgatcaaattagtctctaaattaccgcatacagtagtagaaatatatatacagtaaaaaaaaaaa---tcataataact 49547535  T
Q  810 gcagaaaagtatgaaaatatgagaagtgcaatcaataatcataaaccactaaccagtggtctcaagtttgatttgatgttcctttggtagtaaggtgttg 909  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||| ||||||||||||    
T  49547536 gcagaaaagtatgaaaatatgagaagtgcaatcaataatcataaaccactaac------------------tttgatgttcctttggcagtaaggtgttg 49547617  T
Q  910 aatcccaaaattaaatctgccctttaagcagcttcttcactctagctgcagtaccttttgaatcaattcttttatccttgaaaccttgcaggacttttaa 1009  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |    
T  49547618 aatcccaaaattaaatctgccctttaagcagcttcttcactctagctgcagtatcttttgaatcaattcttttatccttgaaaccttgtaggacttttga 49547717  T
Q  1010 aaactcataataactttccctcttatctt-aaatgcaacttttattgccttaagaagcggtgatgc 1074  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49547718 aaactcataataactttccctcttatcttgaaatgcaacttttattgccttaagaagcggtgatgc 49547783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 590 - 756
Target Start/End: Complemental strand, 47872682 - 47872526
Alignment:
Q  590 gaacctctaacccctattttaatactccaaagatatagactacattagttcattacgtgaaaaaattctatcatcactcatcagtttagttctccaacag 689  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||| |||||       |||||  | ||||||| |||||     
T  47872682 gaacccctaacccctattttaatactccaaagatatagactccatcagttcattacatgacaaatttcta-------tcatcgatgtagttcttcaacaa 47872590  T
Q  690 tgcagagtgacccaacttaatccatcaattaattgcacaaagcttgatcaaattagtctctaaatta 756  Q
    ||||||||| | |||||||||||||||   |||||  ||||  || |||||||||||||||||||||    
T  47872589 tgcagagtgtcacaacttaatccatca---aattgtgcaaaatttcatcaaattagtctctaaatta 47872526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 598 - 720
Target Start/End: Complemental strand, 33857328 - 33857205
Alignment:
Q  598 aacccctattttaatactccaaagatatagactacattagttcatta---cgtgaaaaaattctatcatcactcatcag-tttagttctccaacagtgca 693  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    ||||||||||||||||||||   || || |||  |||| ||||| ||||    
T  33857328 aacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatca---attagtttttcttcttcaacaatgca 33857232  T
Q  694 gagtgacccaacttaatccatcaatta 720  Q
    | ||| | |||||||||||||||||||    
T  33857231 gtgtgtcacaacttaatccatcaatta 33857205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 598 - 720
Target Start/End: Original strand, 33923595 - 33923718
Alignment:
Q  598 aacccctattttaatactccaaagatatagactacattagttcatta---cgtgaaaaaattctatcatcactcatcag-tttagttctccaacagtgca 693  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||    ||||||||||||||||||||   || || |||  |||| ||||| ||||    
T  33923595 aacccctattttaatactccaaagatatagacttcatcagttcattaacgtgtgaaaaaattctatcatca---attagtttttcttcttcaacaatgca 33923691  T
Q  694 gagtgacccaacttaatccatcaatta 720  Q
    | ||| | |||||||||||||||||||    
T  33923692 gtgtgtcacaacttaatccatcaatta 33923718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 583 - 644
Target Start/End: Original strand, 44261669 - 44261730
Alignment:
Q  583 aatgcatgaacctctaacccctattttaatactccaaagatatagactacattagttcatta 644  Q
    |||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| ||| |||||    
T  44261669 aatgcatgaacccctaacccctattttaatcctccaaagataaagactccatcagtccatta 44261730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 377 - 421
Target Start/End: Original strand, 32123584 - 32123628
Alignment:
Q  377 tatattaatgataaacattcatttatcattatctacaaaaacact 421  Q
    |||||||||||||||||||||||||||||| | ||||||||||||    
T  32123584 tatattaatgataaacattcatttatcattctttacaaaaacact 32123628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 925
Target Start/End: Complemental strand, 33856943 - 33856891
Alignment:
Q  873 aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat 925  Q
    |||| ||||||||||||||||| | || ||||| |||||||||||||||||||    
T  33856943 aagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaat 33856891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 873 - 925
Target Start/End: Original strand, 33923980 - 33924032
Alignment:
Q  873 aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat 925  Q
    |||| ||||||||||||||||| | || ||||| |||||||||||||||||||    
T  33923980 aagtgtgatttgatgttcctttcgcaggaaggtattgaatcccaaaattaaat 33924032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 857 - 925
Target Start/End: Complemental strand, 45191285 - 45191217
Alignment:
Q  857 actaaccagtggtctcaagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat 925  Q
    ||||||||||||| |  ||| ||||||||||||||||||| || ||||  ||||| |||||||||||||    
T  45191285 actaaccagtggtgtggagtgtgatttgatgttcctttggcaggaaggcattgaaccccaaaattaaat 45191217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 806 - 874
Target Start/End: Original strand, 49444123 - 49444191
Alignment:
Q  806 aactgcagaaaagtatgaaaatatgagaagtgcaatcaataatcataaaccactaaccagtggtctcaa 874  Q
    ||||||||||||| || || ||||||||| | |||| |||| | |||||| ||||||||||||||||||    
T  49444123 aactgcagaaaagcatcaagatatgagaattacaatgaatagtgataaactactaaccagtggtctcaa 49444191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 49443886 - 49443948
Alignment:
Q  73 atgaactgaattaggaggaggatctgttaaaagaaaaggacaaatgaggaatcctgacataatg 136  Q
    |||| |||||| ||||||||||||||||  ||||||| || |||||||||||||| ||||||||    
T  49443886 atgagctgaatgaggaggaggatctgttggaagaaaaaga-aaatgaggaatcctaacataatg 49443948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 819 - 865
Target Start/End: Original strand, 44261863 - 44261909
Alignment:
Q  819 tatgaaaatatgagaagtgcaatcaataatcataaaccactaaccag 865  Q
    |||||| |||||||||||||||| |||||| |||||| |||||||||    
T  44261863 tatgaacatatgagaagtgcaatgaataatgataaactactaaccag 44261909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 365 - 406
Target Start/End: Original strand, 34141638 - 34141679
Alignment:
Q  365 aaaatttaaaagtatattaatgataaacattcatttatcatt 406  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||    
T  34141638 aaaatttaaaaatatattaatcataaacattaatttatcatt 34141679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 826 - 1060
Target Start/End: Complemental strand, 14961593 - 14961355
Alignment:
Q  826 atatgagaagtgcaatcaataatcataaaccactaaccagtggtctcaagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaaattaaat 925  Q
    ||||| ||| |||||| ||||||||||||| |||||||||| |||  |||| || ||  || ||||||| | || ||| |||||||||||||||||| ||    
T  14961593 atatgtgaaatgcaatgaataatcataaactactaaccagtcgtccaaagtgtggttcaatattccttttgcaggaagatgttgaatcccaaaattagat 14961494  T
Q  926 c----tgccctttaagcagcttcttcactctagctgcagtaccttttgaatcaattcttttatccttgaaaccttgcaggacttttaaaaactcataata 1021  Q
    |    |||||||||||||||| ||| ||||| || ||   |||| ||  |||||||| ||||||||||||| |||  | |||||||||||| |||| |||    
T  14961493 ctgtatgccctttaagcagctccttgactcttgcagcgacacctcttatatcaattc-tttatccttgaaatcttttatgacttttaaaaagtcattata 14961395  T
Q  1022 actttccctcttatctt-aaatgcaacttttattgcctta 1060  Q
    | ||||||||||||||| ||| |||||||| | |||||||    
T  14961394 attttccctcttatcttgaaacgcaactttgactgcctta 14961355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 377 - 420
Target Start/End: Complemental strand, 21777249 - 21777206
Alignment:
Q  377 tatattaatgataaacattcatttatcattatctacaaaaacac 420  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  21777249 tatattaatgataaacattcatttatcattctctacaaaaacac 21777206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Original strand, 42668172 - 42668210
Alignment:
Q  383 aatgataaacattcatttatcattatctacaaaaacact 421  Q
    |||||||||||||||||||||||||||||||||||||||    
T  42668172 aatgataaacattcatttatcattatctacaaaaacact 42668210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 873 - 918
Target Start/End: Complemental strand, 14961314 - 14961269
Alignment:
Q  873 aagtttgatttgatgttcctttggtagtaaggtgttgaatcccaaa 918  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||    
T  14961314 aagtgtgatttgatgttcctttggcaggaaggtgttgaatcccaaa 14961269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 35586218 - 35586173
Alignment:
Q  372 aaaagtatattaatgataaacattcatttatcattatctacaaaaa 417  Q
    |||| |||||||||||||||| ||||||||||||| ||||||||||    
T  35586218 aaaaatatattaatgataaactttcatttatcattctctacaaaaa 35586173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 538 - 653
Target Start/End: Complemental strand, 14961874 - 14961756
Alignment:
Q  538 gtaagacagtttttaccagtggaaattagtttccgaagtagatataatg---catgaacctctaacccctattttaatactccaaagatatagactacat 634  Q
    ||||||||||| ||| ||||||| |||||||||| ||| | ||| ||||   |||||||| || |||| ||||||||| ||||||| || |||| | |||    
T  14961874 gtaagacagttgttatcagtggacattagtttcccaaggacataaaatgcatcatgaacccctgacccatattttaatgctccaaatatgtagattccat 14961775  T
Q  635 tagttcattacgtgaaaaa 653  Q
     |||| ||||| |||||||    
T  14961774 cagtttattacatgaaaaa 14961756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 370 - 421
Target Start/End: Complemental strand, 42157784 - 42157733
Alignment:
Q  370 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacact 421  Q
    |||||| ||||| |||||||||||||||||||||||| ||| ||||| ||||    
T  42157784 ttaaaaatatatgaatgataaacattcatttatcattctctgcaaaagcact 42157733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 1175912 - 1175862
Alignment:
Q  370 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 420  Q
    |||||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  1175912 ttaaaaatatattaatcataaacattcatttatcattctctacaaaaacac 1175862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 12150688 - 12150738
Alignment:
Q  370 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaacac 420  Q
    |||||| ||||||||| ||||  ||||||||||||||||||||||||||||    
T  12150688 ttaaaaatatattaatcataagtattcatttatcattatctacaaaaacac 12150738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 13839540 - 13839473
Alignment:
Q  354 ataatacttccaaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaacactat 423  Q
    ||||||||  ||||| ||||||  |||||||| ||||| |||||||||||||| ||||||||| ||||||    
T  13839540 ataatactctcaaaaattaaaa--atattaatcataaatattcatttatcattctctacaaaaccactat 13839473  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 33740066 - 33740020
Alignment:
Q  371 taaaagtatattaatgataaacattcatttatcattatctacaaaaa 417  Q
    ||||| ||||||||| ||||||||| ||||||||||||||| |||||    
T  33740066 taaaattatattaattataaacattgatttatcattatctaaaaaaa 33740020  T

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Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 365 - 416
Target Start/End: Original strand, 32874844 - 32874894
Alignment:
Q  365 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaa 416  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  32874844 aaaatttaaaa-tatattaatcataaacattcatttttcattatctacaaaa 32874894  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 377 - 420
Target Start/End: Original strand, 39418173 - 39418216
Alignment:
Q  377 tatattaatgataaacattcatttatcattatctacaaaaacac 420  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||    
T  39418173 tatattaatcataaacattcatttatcattccctacaaaaacac 39418216  T

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Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 378 - 421
Target Start/End: Original strand, 13858445 - 13858488
Alignment:
Q  378 atattaatgataaacattcatttatcattatctacaaaaacact 421  Q
    |||||||| |||| ||||||||||||||||||||||||||||||    
T  13858445 atattaatcataagcattcatttatcattatctacaaaaacact 13858488  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 7181438 - 7181389
Alignment:
Q  370 ttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 419  Q
    |||||| ||||||||| |||| ||||| ||||||||| ||||||||||||    
T  7181438 ttaaaaatatattaatcataagcattcttttatcattctctacaaaaaca 7181389  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 352 - 420
Target Start/End: Complemental strand, 45471900 - 45471832
Alignment:
Q  352 taataatacttccaaaatttaaaagtatattaatgataaaca-ttcatttatcattatctacaaaaacac 420  Q
    ||||||||||  ||||||| |||| |||||||||||||| |  ||||||||| |||||||||||||||||    
T  45471900 taataatactctcaaaattaaaaa-tatattaatgataagctgttcatttattattatctacaaaaacac 45471832  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 583 - 626
Target Start/End: Complemental strand, 55771104 - 55771061
Alignment:
Q  583 aatgcatgaacctctaacccctattttaatactccaaagatata 626  Q
    |||||||||||| | |||| ||||||||||||||||||||||||    
T  55771104 aatgcatgaaccccaaacctctattttaatactccaaagatata 55771061  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 583 - 626
Target Start/End: Complemental strand, 55835338 - 55835295
Alignment:
Q  583 aatgcatgaacctctaacccctattttaatactccaaagatata 626  Q
    |||||||||||| | |||| ||||||||||||||||||||||||    
T  55835338 aatgcatgaaccccaaacctctattttaatactccaaagatata 55835295  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 56439344 - 56439290
Alignment:
Q  365 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 419  Q
    |||| |||||| |||||||||||| ||||||||| ||||||| ||||||| ||||    
T  56439344 aaaaattaaaaatatattaatgattaacattcatctatcattctctacaataaca 56439290  T

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Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 5193176 - 5193229
Alignment:
Q  365 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaaaaca 419  Q
    ||||||||||| ||||||||| |||||||||||||||| ||| | ||||||||||    
T  5193176 aaaatttaaaa-tatattaatcataaacattcatttattattctgtacaaaaaca 5193229  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 415
Target Start/End: Complemental strand, 38216488 - 38216438
Alignment:
Q  365 aaaatttaaaagtatattaatgataaacattcatttatcattatctacaaa 415  Q
    |||| |||||| ||||||||| |||||||||||| ||||||| ||||||||    
T  38216488 aaaaattaaaaatatattaatcataaacattcatctatcattctctacaaa 38216438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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