View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13834_low_2 (Length: 284)
Name: NF13834_low_2
Description: NF13834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13834_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 17166533 - 17166797
Alignment:
| Q |
1 |
cataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgattttgaaaacgagagactattttctttactctaataaaataag |
100 |
Q |
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| T |
17166533 |
cataacttgccacccacatccaattaccacacctatataaatgaccaaaaagttcgattttgaaaacgagagactattttctttactctaataaaataaa |
17166632 |
T |
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| Q |
101 |
ggggtcaaaactgcaattaaacttagattaaactttttctaatccaaaagcaagtaaattataacctgatatggtttgtgaaatactgttgataaccatt |
200 |
Q |
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| T |
17166633 |
ggggtcaaaactgcaattaaacttagattaaactttttctagtccaaaagcaagtaaattataacctgatatggtttgtgaaatactgttgataaccatt |
17166732 |
T |
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| Q |
201 |
gttataccaagaagataagctaattcacttgcagcatgtattatatcatcactattggtaaagat |
265 |
Q |
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| T |
17166733 |
gtcataccaagaaggtaagctaattcacttgcagcatgtattatatcatcactattggtaaagat |
17166797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 265
Target Start/End: Original strand, 17149013 - 17149151
Alignment:
| Q |
127 |
attaaactttttctaatccaa-aagcaagtaaattataacctgatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaatt |
225 |
Q |
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| T |
17149013 |
attaaactttttctagtcaaccaagcaagtaa-taatcacctgaaatagtttgtgagatactgttgataaccatggttataccaagaaggtatgctaatt |
17149111 |
T |
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| Q |
226 |
cacttgcagcatgtattatatcatcactattggtaaagat |
265 |
Q |
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| T |
17149112 |
cacttgcagcatgtatcaaatcatcactgttggtaaagat |
17149151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 17135269 - 17135370
Alignment:
| Q |
164 |
acctgatatggtttgtgaaatactgttgataaccattgttataccaagaagataagctaattcacttgcagcatgtattatatcatcactattggtaaag |
263 |
Q |
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||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||| ||||||||| |
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| T |
17135269 |
acctgatatagtttgtgaaatactgttgagaaccatggttataccaagaaaatatgctaattcactagcagcatgtatcatatccacacttttggtaaag |
17135368 |
T |
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| Q |
264 |
at |
265 |
Q |
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|| |
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| T |
17135369 |
at |
17135370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17134929 - 17134965
Alignment:
| Q |
1 |
cataacttgccacccacatccaattaccacacctata |
37 |
Q |
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| T |
17134929 |
cataacttgccatccacatccaatgaccacacctata |
17134965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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