View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13834_low_3 (Length: 221)
Name: NF13834_low_3
Description: NF13834
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13834_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 38817630 - 38817829
Alignment:
| Q |
18 |
ttctagttactactttgatttctaccgttctcttgggaatggtaatttgctactaccacaaaggtaaggataatataattaactttcactctagagtgat |
117 |
Q |
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| T |
38817630 |
ttctagttactactttgacttctaccgttctcttgggaatggtaatttgctactaccacaaaggtaaggataatataattaactttcactctagagtgat |
38817729 |
T |
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| Q |
118 |
aaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaagaatg |
217 |
Q |
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| T |
38817730 |
aaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctcacaccgtttggtaggaacagtgattactattacaagaatg |
38817829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 48477979 - 48477773
Alignment:
| Q |
18 |
ttctagttactactttgatttctaccgttctcttgggaatggtaattt---gctactaccacaaaggtaaggataatataattaactttcactctagagt |
114 |
Q |
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| T |
48477979 |
ttctggttactgctttgactgctacctttctcttggcaatggtatttttttgctactaccacaaaggtaatgaggatataattaactttcaccctagagc |
48477880 |
T |
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| Q |
115 |
gataaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaaga |
214 |
Q |
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| T |
48477879 |
gataaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaaga |
48477780 |
T |
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| Q |
215 |
atggtgt |
221 |
Q |
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||||||| |
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| T |
48477779 |
atggtgt |
48477773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 48884184 - 48884386
Alignment:
| Q |
18 |
ttctagttactactttgatttctaccgttctcttgggaatggtaattt---gctactaccacaaaggtaaggataatataattaactttcactctagagt |
114 |
Q |
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|||| |||||| ||||| | ||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
48884184 |
ttctggttactgttttgactgctaccgttctcttgggaatggtatttttttgctactaccacaaaggtaatgaggatataattaactttcaccctagagc |
48884283 |
T |
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| Q |
115 |
gataaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaaga |
214 |
Q |
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| T |
48884284 |
gataaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaagaacagtgataactattacaaga |
48884383 |
T |
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| Q |
215 |
atg |
217 |
Q |
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||| |
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| T |
48884384 |
atg |
48884386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 48469655 - 48469453
Alignment:
| Q |
18 |
ttctagttactactttgatttctaccgttctcttgggaatggtaattt---gctactaccacaaaggtaaggataatataattaactttcactctagagt |
114 |
Q |
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|||| |||||| |||||| | ||||| ||||||||| ||||||| ||| ||||||||||||||||||| || ||||||||||||||||| |||||| |
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| T |
48469655 |
ttctggttactgctttgactgctacctttctcttggcaatggtatttttttgctactaccacaaaggtaatgaggatataattaactttcaccctagagc |
48469556 |
T |
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| Q |
115 |
gataaaattgaataataaataaagatattgacatgtgcacaattttcactttttatttatctgacaccgtttggcaggaacagtgataactattacaaga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
48469555 |
gataaaattgaataataaataaagatattgacatgttcacaattttcactttttatttatctcacaccgtttggcaggaacagtgattactattacaaga |
48469456 |
T |
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| Q |
215 |
atg |
217 |
Q |
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||| |
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| T |
48469455 |
atg |
48469453 |
T |
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