View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_high_10 (Length: 483)
Name: NF13835_high_10
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 77 - 468
Target Start/End: Complemental strand, 7705827 - 7705433
Alignment:
| Q |
77 |
ggttatatattgtgcacatgtaaaatcgattatattactatctgaatagttgaattattatgtactta-agttttgaaatcatgttgtcaataataagga |
175 |
Q |
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| T |
7705827 |
ggttatatattgttcacatgtaaaattgattat--tactatctgaatagttgaattattatgtattttgaattttaaaatcatgttgtcaataataagga |
7705730 |
T |
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| Q |
176 |
aattcatgtttcaattacttccattttcctctatttatttcttaatttccttttcatatttcatccct-----------ttccttacgtaatccaatatg |
264 |
Q |
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| T |
7705729 |
aattcatgtttcaattacttccattttcctctatttatttcttaatttccttttcatatatcattcctcatttcatcccttccttacgta------tatt |
7705636 |
T |
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| Q |
265 |
atgcactggttagaattagcgataagcattaacaattaataattttattgcttaaaggatctacatggtttatattgctattgaagaatgacattggcaa |
364 |
Q |
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| T |
7705635 |
atgcactgattggcattagcgataagcattaacaattaataattttattgcttaaaggatctacatggcttatattgctattgaagaatgacattggcaa |
7705536 |
T |
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| Q |
365 |
aacattctacatgatttgaatcacggtaaaatttaatttctgatacacaggttggtgccatgaatctgcagaattgaatttgtcggtcgctggacacatt |
464 |
Q |
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| T |
7705535 |
aacattctacatgatttgaatcactgtaaaatttaatttctgatacacaggttggtgccatgaatctgcagaattgaatttttcggtcgctggac-catt |
7705437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7705930 - 7705887
Alignment:
| Q |
1 |
gataaaagtttgaagatatatgaagaattgtagcgtagtcttta |
44 |
Q |
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| T |
7705930 |
gataaaagtttgaagatatatgaagaattgtagcgtagtcttta |
7705887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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