View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_high_14 (Length: 416)
Name: NF13835_high_14
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 34573819 - 34574218
Alignment:
| Q |
17 |
aaaatccactacctttgattgatcactatgattaacaacattgacaacaagcacatcctcagcaatatccttcaccttaaaaacaaactcctcgttccaa |
116 |
Q |
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| T |
34573819 |
aaaatccactacctttgattgatcactatgattaacaacattgacaacaagcacatcctcagcaatatccttcaccttaaaaacaaactcctcgttccaa |
34573918 |
T |
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| Q |
117 |
atgggattgaacgtgtttttcaatatccttgtcttgtatttaaactttccaagtttaagcttcacgcgagaatttttcacgggtaagtctttggcttcta |
216 |
Q |
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| T |
34573919 |
atgggattgaacgtgtttttcaatatccttgtcttgtatttaaactttccaagtttaagcttcacacgagaatttttcacgggtaagtctttggcttcta |
34574018 |
T |
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| Q |
217 |
atacacagacatataacttgttcaacatagtttataaagcaaaagcggtatggcatgttggattggagaagagaaaacggtgataatgggttttagtgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34574019 |
atacacagacatataacttgttcaacatagtttataaagcaaaagcggtatggcatgttggattggagaagagaaaacggtgataatgggttttagtgtt |
34574118 |
T |
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| Q |
317 |
ttatacacttctgttttgttattagtggcagaagaatacgtgtaagtagaagaaaatgacacgtggaggggtagcacagggacaaaatagaacgtggaat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
34574119 |
ttatacacttctgttttgttattagtggcagaagaatacgtgtaagtagaagaaaatgacacgtggagggttagcacatggacaaaatagaacgtggaat |
34574218 |
T |
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