View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_high_20 (Length: 319)
Name: NF13835_high_20
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 29030735 - 29030446
Alignment:
| Q |
15 |
cataaatatgaactctccaaactaaacaatcaaaccctaatnnnnnnnnttcaaataaaaacc-caatgttccatcttcagacaattattaacgataaca |
113 |
Q |
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| T |
29030735 |
catagatatgaactctccaaaccaagcaattaaaccctaataaaaaaaat-caaataaaaaacacaatgttccatcttcagacaattattaacgataaca |
29030637 |
T |
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| Q |
114 |
tattaatcaaaattccacatgcatatnnnnnnnnccataatagatttagatttaaaaaaa-cgannnnnnnnnnngaaaaaatataaatttacagagaat |
212 |
Q |
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| T |
29030636 |
tattaatcaaaattccacatgcatataaaaaaaaccataatagatttagatttaaaaaaaacgattttttttcaa-aaaaaatataaatttacagagaat |
29030538 |
T |
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| Q |
213 |
tgagattgagaaaaggaacctgcaaacggatattgcggaatcgttcttgagcatcagtgatactaaacccacgaacacttttggtagaaatt |
304 |
Q |
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| T |
29030537 |
tgagattgagaaaaggaacctgcaaacggatattgcggaatcgttcttgagcatcagtgatactaaacccacgaacacttttggtagaaatt |
29030446 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 42734239 - 42734288
Alignment:
| Q |
230 |
acctgcaaacggatattgcggaatcgttcttgagcatcagtgatactaaa |
279 |
Q |
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| T |
42734239 |
acctgcaagcgaatattgcggaatcgttcttgcgcatcggtcatactaaa |
42734288 |
T |
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