View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_high_22 (Length: 304)
Name: NF13835_high_22
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 34574206 - 34574508
Alignment:
| Q |
1 |
tagaacgtggaatttgggtaagtgaaagctagtttgtcaccactctaagatatcatttttgtgactcata---tatcataatgatttacgttgtgactca |
97 |
Q |
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| T |
34574206 |
tagaacgtggaatttgggtaagtgaaagctagtttgtcattactctaagatatcatttttgtgactcataatatatcataatgatttacgttgtgactca |
34574305 |
T |
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| Q |
98 |
acttttgcttagaaaaagtttgttttcgtgtagctttgtgtgtttctgttataggaaacttcaaaattgaagtataacgata---------------acg |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
34574306 |
acttttgcttagaaaaagtttgttttcgtgtagctttgtgtgtttctgttataggaaacttcaaaattgaagtataacgataggatgacctatatatagg |
34574405 |
T |
|
| Q |
183 |
ataagtattgctgcgagatttaaattatatatataattacggtgtgattaaagtaaaaataagttggcggtgggagataacttttgcaggcaatgaatga |
282 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34574406 |
ataagtattgctgcgagatttaagttatatatataataacggtgtgattaaagtaaaaataagttggcggtgggagataacttttgcaggcaatgaatga |
34574505 |
T |
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| Q |
283 |
aac |
285 |
Q |
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||| |
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| T |
34574506 |
aac |
34574508 |
T |
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