View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_high_33 (Length: 205)
Name: NF13835_high_33
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 55504931 - 55504762
Alignment:
| Q |
7 |
cctgtcgctgctgaggagtttgaggatatactgccaacactcatcgggtaaatatgaatctgctacgagtctcattctcttgttgtcgccgtcatgatgc |
106 |
Q |
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| T |
55504931 |
cctgtcgctgctgaggagtttgaggatatactgccaacactcatcaggtaaatatgaatctgctacgagtctcattctcttgttgtcgccgtcatgatgc |
55504832 |
T |
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| Q |
107 |
atgccgacggtggtcgtctattgttgaagtttggcaatagggtttctttttcttaggacaaaacttacaggttagg |
182 |
Q |
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| T |
55504831 |
atgccgacggtggtcgtctattgttgaagtttggcaacaggg------tttcttaggacaaaacttacaggttagg |
55504762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 55504557 - 55504388
Alignment:
| Q |
7 |
cctgtcgctgctgaggagtttgaggatatactgccaacactcatcgggtaaatatgaatctgctacgagtctcattctcttgttgtcgccgtcatgatgc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
55504557 |
cctgtcgctgctgaggagtttgaggatatactgccaacactcatcaggtaaatatgaatctgttacgagtctcattctcttgttgtcgccgtcatgatgc |
55504458 |
T |
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| Q |
107 |
atgccgacggtggtcgtctattgttgaagtttggcaatagggtttctttttcttaggacaaaacttacaggttagg |
182 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55504457 |
atgccgacggtggtcatttattgttgaagtttggcaatagggtt------tcttaggacaaaacttacaggttagg |
55504388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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