View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13835_high_5 (Length: 648)
Name: NF13835_high_5
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_5 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 244 - 648
Target Start/End: Complemental strand, 30309876 - 30309471
Alignment:
| Q |
244 |
gaaggtctccttttttatcccaaaatttgatttgatttgannnnnnnnnngttgaagaaaatccctaattcttctcagtcccgtccagttgcaccccgtt |
343 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30309876 |
gaaggtctccttttttatcccaaaattt-atttgattt---attttttttgttgaagaaaatccctaattcttctcagtccggtccagttgcaccccgtt |
30309781 |
T |
|
| Q |
344 |
ttctttctcacaata-cagagagaatctcttcttctcttagcccgccgccacccctctccggcgacgcccacgcagttcacctgtccaggtttgtctcct |
442 |
Q |
| |
|
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30309780 |
ttctttctcacaaaaacagagagaatctcttcttctcttagcccgccgccacccctctccggcgacgcccacgcagttcacctgtccaggtttgtctcct |
30309681 |
T |
|
| Q |
443 |
ccttcttctccgttttctctggattacaaagcttaaatgcattttcttagaatgaaatttgatttgttttta----attattaataatctattaacttaa |
538 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30309680 |
ccttcttctctgttttctctggattacaaagcttaaatgcattttcttagaatgaaatttgatttgtttttaattaattattaataatctattaacttaa |
30309581 |
T |
|
| Q |
539 |
tggatgcattttcaatttctgtttaaactaaagttcggtgtgttgcagaatgggaaagggtttgatatgggcgacggcagaggatctgcataggaatagg |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30309580 |
tggatgcattttcaatttctgtttaaactaaagttcggtgtgttgcagaatgggaaagggtttgatatgggcgacggcagaggatctgcataggaatagg |
30309481 |
T |
|
| Q |
639 |
ggtcgagttc |
648 |
Q |
| |
|
|||||||||| |
|
|
| T |
30309480 |
ggtcgagttc |
30309471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 30310568 - 30310498
Alignment:
| Q |
49 |
ggatttaaaaatgatgaatttttggttcgaaaatgatgatgaagaagataatttatttaatttttgtaatt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30310568 |
ggatttaaaaatgatgaatttttggttcgaagatgatgatgaagaagataatttatttaatttttgtaatt |
30310498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 30310446 - 30310395
Alignment:
| Q |
130 |
ttatcatgtcatatatattgtaacaagtgttacatcaaaaggttagcgtcgc |
181 |
Q |
| |
|
||||||| |||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30310446 |
ttatcatatcatatttattgtaacaagcgttacatcaaaaggttagcgtcgc |
30310395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University