View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_high_6 (Length: 592)
Name: NF13835_high_6
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 14 - 578
Target Start/End: Original strand, 28051128 - 28051692
Alignment:
| Q |
14 |
agaccaacttcaaaatctgactagtctctaaattcaaatttattaagacagaactatatgatctaaggatagccatggcccatgggtatcattcttaaac |
113 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28051128 |
agaccaacttcaaaatctggctggtctctaaattcaaatttattaagacagaactatatgatctaaggatagccatggcccatgggtatcattcttaaac |
28051227 |
T |
|
| Q |
114 |
ttcctaaccagccatactccatatg-aaaattctggggctatggaaaatgaaacatgaggctaaaacttgattgatgatgtaaatagatcaatttacaca |
212 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28051228 |
ttcctaaccagccatac----tatgaaaaattctggggctatggataatgaaacatgaggctaaaacttgattgatgatgtaaatagatcaatttacaca |
28051323 |
T |
|
| Q |
213 |
cgcacatcgcagtgatgtttgtatgaat---cagcaaaatttgcaatgaagtacaattcatactgaagaaaccacttgataaaactatttataccctact |
309 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
28051324 |
cgcacatcgcagtgatgtttgtatgaatcagcagcataatttgcaatgaagtacaattcataccgaagaaaccacttgataaaactatttatatcctact |
28051423 |
T |
|
| Q |
310 |
ataaataaagttcaaataatatatgcacccaaatgaacaaaaatgcatcaattcaacatatatgctaaacttgaaataatagtagttctaaacagttgga |
409 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28051424 |
ataaataaggttcaaataatatatgcacccaaatgaacaaaaatgcatcaattcaacatatatgctaaacttgaaataatagtagttctaaacagttgga |
28051523 |
T |
|
| Q |
410 |
agttaaacggccacgtatataaagcccaacatacctgaataccgttgattgttagaagaactttgattaaaacatataacttgaggagatgctgcatcat |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28051524 |
agttaaacggccacgtatataaagcccaacatacctgaatacggttgattgttagaagaactctgattaaaacatataacttgaggagatgctgcatcat |
28051623 |
T |
|
| Q |
510 |
ccacgtagggcgattgagattttctcaaatgagaaatttgaaatggagaaggtgttgaagacacatatg |
578 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28051624 |
ccacgtagggcgattgagattttctcaaatgagaaatttgaaatggagaaggtgttgaagacacatatg |
28051692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 14 - 385
Target Start/End: Complemental strand, 13207414 - 13207063
Alignment:
| Q |
14 |
agaccaacttcaaaatctgactagtctctaaattcaaatttattaagacagaactatatgatctaaggatagccatggcccatgggtatcattcttaaac |
113 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||| ||||| |||||||| |||||| |
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| T |
13207414 |
agaccaacttcaaaatttgactggtctctaaattcaaatttaataagacagaac-----gatctaatgatag-------------gtatcatttttaaac |
13207333 |
T |
|
| Q |
114 |
ttcctaaccagccatactccatatgaaaattctggggctatggaaaatgaaacatgaggctaaaacttgattgatgatgtaaatagatcaatttacacac |
213 |
Q |
| |
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||||||| ||||||||||||| |||||| || |||||| || | ||||||||| ||||||||||||||||||||||| || |||||||||||||||| |
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| T |
13207332 |
ttcctaatcagccatactccaaatgaaacttttggggcaatt-agaatgaaacacgaggctaaaacttgattgatgatcgaa-tagatcaatttacacat |
13207235 |
T |
|
| Q |
214 |
gcacatcgcagtgatgtttgtatgaatcagcaaaatttgcaatgaagtacaattcatactgaagaaaccacttgataaaactatttataccctactataa |
313 |
Q |
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||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13207234 |
gcacatcacagtaatgtttgtatgaatttgcataatttgcaatgaagtacaattcatactgaagaaaccacttggtaaaactatttataccctactataa |
13207135 |
T |
|
| Q |
314 |
ataaagttcaaataatatatgcacccaaatgaacaaaaatgcatcaattcaacatatatgctaaacttgaaa |
385 |
Q |
| |
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||| ||||||||||| |||||||| |||| | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
13207134 |
atagggttcaaataatttatgcacctaaataatcaaaaatgcatcaatgcaacatatatgctaaacttgaaa |
13207063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 7985219 - 7985577
Alignment:
| Q |
14 |
agaccaacttcaaaatctgactagtctctaaattcaaatttattaagacagaactatatgatctaaggatagccatggcccatgggtatcattcttaaac |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| |||||| |
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| T |
7985219 |
agaccaacttcaaaatctgaccggtctctaaattcaaatttaataagacagaactgtatgatctaatgatag-------------gtatcatttttaaac |
7985305 |
T |
|
| Q |
114 |
ttcctaaccagccatactccatatgaaaattctgggg-ctatggaaaatgaaacatgaggctaaaacttgattgatgatgtaaatagatcaatttacaca |
212 |
Q |
| |
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||||||| ||||||||||||| |||||| || ||||| | ||||| ||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
7985306 |
ttcctaatcagccatactccaaatgaaacttatgggggcaatggagaatgaaacacgaggctaaaacttgattgatgat-tgaatagatcaatttacaca |
7985404 |
T |
|
| Q |
213 |
cgcacatcgcagtgatgtttgtatgaatcagcaaaatttgcaatgaagtacaattcatactgaagaaaccacttgataaaactatttataccctactata |
312 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7985405 |
tgcacatcacagtgatgtttgtatgaatctgcataatttgcaatgaagtacaattcatactgaagaaaccacttggtaaaactatttataccctactata |
7985504 |
T |
|
| Q |
313 |
aataaagttcaaataatatatgcacccaaatgaacaaaaatgcatcaattcaacatatatgctaaacttgaaa |
385 |
Q |
| |
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|||| |||||||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
7985505 |
aatagggttcaaataatatatgcacctaaataataaaaaatgcatcaatgcaacatatatgctaaacttgaaa |
7985577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 98 - 385
Target Start/End: Original strand, 23480061 - 23480348
Alignment:
| Q |
98 |
ggtatcattcttaaacttcctaaccagccatactccatatgaaaattctggggctatggaaaatgaaacatgaggctaaaacttgattgatgatgtaaat |
197 |
Q |
| |
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||||||||| ||||||||||||| || |||||||||| |||||| || |||||| ||||| ||||||||||||||||||||||||||||||||| | ||| |
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| T |
23480061 |
ggtatcatttttaaacttcctaatcatccatactccaaatgaaacttttggggcaatggagaatgaaacatgaggctaaaacttgattgatgat-tgaat |
23480159 |
T |
|
| Q |
198 |
agatcaatttacacacgcacatcgcagtgatgtttgtatgaatcagcaaaatttgcaatgaagtacaattcatactgaagaaaccacttgataaaactat |
297 |
Q |
| |
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||||||||||||||| ||||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23480160 |
agatcaatttacacatgcacatcacagtgacgtttgtatgaatctgcataatttgcaatgaagtacaattcatactgaagaaaccacttggtaaaactat |
23480259 |
T |
|
| Q |
298 |
ttataccctactataaataaagttcaaataatatatgcacccaaatga-acaaaaatgcatcaattcaacatatatgctaaacttgaaa |
385 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |||| | | |||||||||||||| ||||||||||||||||||||||| |
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| T |
23480260 |
ttataccctactataaatagggttcaaataatatatgcacctaaataataaaaaaatgcatcaatgcaacatatatgctaaacttgaaa |
23480348 |
T |
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