View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_high_7 (Length: 575)
Name: NF13835_high_7
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_high_7 |
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| [»] scaffold1768 (3 HSPs) |
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Alignment Details
Target: scaffold1768 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: scaffold1768
Description:
Target: scaffold1768; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 561 - 783
Alignment:
| Q |
1 |
atcaatatttgtaaggtaacaaaattttactcattatcatatgaacacagaaatgaacagatatggtttgtgaaaggcagcaacatgaaggaaatgaaga |
100 |
Q |
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||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
561 |
atcaagatttgtaaggtaacaaaaatttaaaaattatcatatgaacagagaaatgaaaagatatggtttgtgaaaggcagcaacatgaaggaaatgaaga |
660 |
T |
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| Q |
101 |
ggcagtaagagatataaatagcaagcacatgacttctgtaatttggtttataatttaaaccatacatttagatctatacagtcaatattagtttctcttc |
200 |
Q |
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| T |
661 |
ggcagtaagagatgtaaatagcaagcacgtgacttctttaatttggtttataatttaaaccatacatttagatctatacagtcaatattagtttctcttc |
760 |
T |
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| Q |
201 |
tctctctgtaagtagtgctctcg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
761 |
tctctctgtaagtagtgctctcg |
783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1768; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 295 - 463
Target Start/End: Original strand, 853 - 1021
Alignment:
| Q |
295 |
ttactctcattgaccgaaacaattgattgatccatgaagaaattaatgttatcaaaagcaagagataaccatagttttttagcataagggcagtccctga |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
853 |
ttactctcattgaccgaaacaattgattgatccatgaagaaattaatgttatcaaaagcaagagataaccctagttttttagcataagggcagtccctca |
952 |
T |
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| Q |
395 |
aacaatggaagatgctctcattgaccgagatacatcttggacaagaagttaagtgaaacatgccccatt |
463 |
Q |
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| T |
953 |
aacaatggaagatgccctcattgaccgagatacatcttggacaagaagttaagtgaaacatgccccatt |
1021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1768; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 473 - 559
Target Start/End: Original strand, 1063 - 1149
Alignment:
| Q |
473 |
tcttgatgaggaatttaatcttctttggtgcagcaacatgccatatccacttcctataaccttcaacttctggcattgcgaccgtgt |
559 |
Q |
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| T |
1063 |
tcttgatgaggaatttaatcttctttggtgcagcaacacgccatatccacttccaataaccttcagcttctggcattgcgaccgtgt |
1149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 314 - 463
Target Start/End: Original strand, 14289153 - 14289302
Alignment:
| Q |
314 |
caattgattgatccatgaagaaattaatgttatcaaaagcaagagataaccatagttttttagcataagggcagtccctgaaacaatggaagatgctctc |
413 |
Q |
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| T |
14289153 |
caattgattgatccatgaagaaattaatgttatcaaaagcaagagataaccatagttttttagcataagggcagtccctgaaacaatggaagatactctc |
14289252 |
T |
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| Q |
414 |
attgaccgagatacatcttggacaagaagttaagtgaaacatgccccatt |
463 |
Q |
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| T |
14289253 |
attgaccgacatacatcttggacaagaagttaagtgaaacatgccccatt |
14289302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 33 - 164
Target Start/End: Original strand, 14288106 - 14288237
Alignment:
| Q |
33 |
attatcatatgaacacagaaatgaacagatatggtttgtgaaaggcagcaacatgaaggaaatgaagaggcagtaagagatataaatagcaagcacatga |
132 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||||| ||| |
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| T |
14288106 |
attatcatatgaacaaagaaatgaaaagatatggtttgtgaaaggcagcaacatgaaggaaatgaaaaggcactaagagatgtaaagagcaagcacgtga |
14288205 |
T |
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| Q |
133 |
cttctgtaatttggtttataatttaaaccata |
164 |
Q |
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| T |
14288206 |
cttctttaatttggtttatagtttaaaccata |
14288237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 471 - 559
Target Start/End: Original strand, 14289346 - 14289434
Alignment:
| Q |
471 |
cgtcttgatgaggaatttaatcttctttggtgcagcaacatgccatatccacttcctataaccttcaacttctggcattgcgaccgtgt |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
14289346 |
cgtcttgatgaggaatttaatcttctttggtgcagcaacacaccatatccacttccaataaccttcagcttctggcattgcgaccgtgt |
14289434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Original strand, 14288866 - 14288909
Alignment:
| Q |
180 |
agtcaatattagtttctcttctctctctgtaagtagtgctctcg |
223 |
Q |
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| T |
14288866 |
agtcaatattagtttctcttctctctctgtcagtagtgctctcg |
14288909 |
T |
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