View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13835_low_1 (Length: 1024)
Name: NF13835_low_1
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 925; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 925; E-Value: 0
Query Start/End: Original strand, 18 - 1013
Target Start/End: Original strand, 7901482 - 7902475
Alignment:
| Q |
18 |
agactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggagatcaagtgtttgtcaacgttacca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901482 |
agactgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggagatcaagtgtttgtcaacgttacca |
7901581 |
T |
|
| Q |
118 |
accatgcacaatacaacatgtcgattcattggtagctgaatttcacgaatcaattaaatacatataggtgaagtttttaacactagaaaatacatgtttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7901582 |
accatgcacaatacaacatgtcgattcattggtagctgaatttcacaaatcaattaaatacata--ggtgaagtttttaacactagaaaatacatgtttt |
7901679 |
T |
|
| Q |
218 |
tctctaacaatcgtatatatgcttgttataggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgataca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901680 |
tctctaacaatcgtatatatgcttgttataggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgataca |
7901779 |
T |
|
| Q |
318 |
gaccggaaacagctatacttacgaattcaacgttactgggcaaagaggaacactatggtggcatgcacacattttctggcttagggccactgtctacggg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901780 |
gaccggaaacagctatacttacgaattcaacgttactgggcaaagaggaacactatggtggcatgcacacattttctggcttagggccactgtctacggg |
7901879 |
T |
|
| Q |
418 |
gcaatagtaattatgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtattataaagattcatttt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7901880 |
gcaatagtaattatgcctaaacttggaacaccatttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtattataaagattcatttt |
7901979 |
T |
|
| Q |
518 |
tccnnnnnnnngtattataaagattcatcggatgaaataagaagtatgaaagttgatgtactaactgtttctgcatccaataggtgaatggtggaacaat |
617 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
7901980 |
tccaaaaaaaagtattataaagattcatgggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatgcaataggtgaatggtggaacaat |
7902079 |
T |
|
| Q |
618 |
gatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccaggaccactatttcctt |
717 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7902080 |
gatgtggaagagattgaaaagcaagggaacaaattggggttgccaccaaatatgtcagatgcacatacgatcaatggaaaaccaggaccactatttcctt |
7902179 |
T |
|
| Q |
718 |
gttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatac |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7902180 |
gttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatac |
7902279 |
T |
|
| Q |
818 |
aaaatatttaattatatttacaagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaag |
917 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7902280 |
aaaatatttaattatagttacaagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaag |
7902379 |
T |
|
| Q |
918 |
ggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatg |
1013 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7902380 |
ggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatg |
7902475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 603 - 736
Target Start/End: Original strand, 7891747 - 7891880
Alignment:
| Q |
603 |
gaatggtggaacaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccag |
702 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||| ||||| ||| || ||||||||||||||||| |||| |||||||||||||||||||| || |||| |
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|
| T |
7891747 |
gaatggtggcacaaagatgtggaagagatagtaaaccaagggaaccaaatggggttgccaccaaatatgtcggatgcacatacgatcaatgggaagccag |
7891846 |
T |
|
| Q |
703 |
gaccactatttccttgttctgagaagcgtaagaa |
736 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |
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| T |
7891847 |
gaccactctttccttgttccgagaaacgtaagaa |
7891880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 247 - 488
Target Start/End: Original strand, 7891303 - 7891544
Alignment:
| Q |
247 |
aggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagctatacttacgaattca |
346 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||| |||||||| ||||| || || || ||||| || || || || ||||| || || || |||| |
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|
| T |
7891303 |
aggcatggacttaaacagtatcgcaatggttgggctgatggaccagcttatattactcaatgtccaattcaaactggtggaagctacacatatgacttca |
7891402 |
T |
|
| Q |
347 |
acgttactgggcaaagaggaacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaattatgcctaaacttggaac |
446 |
Q |
| |
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| || || || ||||||||||| | ||||||||||| || ||| | ||| | ||||| ||||| || || ||||| || || |||||||||| ||||| |
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| T |
7891403 |
atgtgacaggacaaagaggaactttgtggtggcatgctcatattctttggttaagggctactgtttatggtgcaattgttatcatgcctaaaccaggaac |
7891502 |
T |
|
| Q |
447 |
accgtttcctttcccacagccagctagagaattcgaaattgt |
488 |
Q |
| |
|
|| |||||||| ||||| |||||||||||||| |||||||| |
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| T |
7891503 |
cccttttccttttccacaaccagctagagaatttgaaattgt |
7891544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 883 - 1013
Target Start/End: Original strand, 7892072 - 7892202
Alignment:
| Q |
883 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
982 |
Q |
| |
|
||||||||| |||| |||||||||||| || | || |||||||| || | |||||| |||| || ||||| || ||||||||||||||| || |||| |
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|
| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
|
| Q |
983 |
ggtcacaacatgacagtagtggaggttgatg |
1013 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |
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|
| T |
7892172 |
ggtcacaacatgacagtagttgaagttgatg |
7892202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 7891052 - 7891123
Alignment:
| Q |
24 |
tgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggagat |
95 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| |||||||||||| || ||||||| ||||||||| |
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|
| T |
7891052 |
tgccatgcaaaaccaattgtaacagtaaatgggaggtatccagggccaacaatttatgctacagaaggagat |
7891123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 233 - 724
Target Start/End: Original strand, 31213672 - 31214165
Alignment:
| Q |
233 |
tatatgcttgttataggcatggacttaaacaatatcgtaatggttgggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagcta |
332 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31213672 |
tatatgcttatcataggcatggacttaaacaataatgtaatggtttggcggatggaccggcttacatcacacagtgtccgatacagaccggaaacagcta |
31213771 |
T |
|
| Q |
333 |
tacttacgaattcaacgttactgggcaaagagg---aacactatggtggcatgcacacattttctggcttagggccactgtctacggggcaatagtaatt |
429 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
31213772 |
tacttacaaattcaacgttactgggaaaagaggaacaacactatggtggcatgcacacattttctggctgagggccactgtctatggggcaatagtaatc |
31213871 |
T |
|
| Q |
430 |
atgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtattataaagattcatttttcc----nnnnn |
525 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31213872 |
atgcctaaacttggaatacc-tttcctttcccacagccagctagagaagtcaaaattgtcttaggtaagtattataaagattcatttttccaaaaaaaaa |
31213970 |
T |
|
| Q |
526 |
nnngtattataaagattcatcggatgaaataagaagtatgaaagttgatgtactaactgtttctgcatccaataggtgaatggtggaacaatgatgtgga |
625 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31213971 |
aaagtattataaagattcatcgg----aataagaagtatgaaagttgatatactaattgtttctgcatgcaataggtgaatggtggaacaatgatgtgga |
31214066 |
T |
|
| Q |
626 |
agagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccaggaccactatttccttgttctga |
724 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31214067 |
agagattgaaaatcaaggaaacaatatggggttgtcaccaaatatgtcagatgcacatacgatcaatggaaaaccaggaccgctatttccttgttctga |
31214165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 31213526 - 31213637
Alignment:
| Q |
22 |
tgtgccatgcaaaacccattgtaactgtaaatgggaggtttccagggccaactatctatgctagggaaggagatcaagtgtttgtcaacgttaccaacca |
121 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
31213526 |
tgtgccatgcaaaacccattgtaacggtaaatgggaggtttccagggccaactatcaatgccagggagggagatcaagtgcttgtcaacgttaccaacca |
31213625 |
T |
|
| Q |
122 |
tgcacaatacaa |
133 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31213626 |
tgcacaatacaa |
31213637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 31213631 - 31213672
Alignment:
| Q |
174 |
aatacatataggtgaagtttttaacactagaaaatacatgtt |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213631 |
aatacaaataggtgaagtttttaacactagaaaatacatgtt |
31213672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 55603227 - 55603191
Alignment:
| Q |
243 |
ttataggcatggacttaaacaatatcgtaatggttgg |
279 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55603227 |
ttataggcatggacttaaacaatatcgcaatggttgg |
55603191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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