View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13835_low_12 (Length: 470)

Name: NF13835_low_12
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13835_low_12
NF13835_low_12
[»] chr1 (2 HSPs)
chr1 (1-457)||(36607710-36608166)
chr1 (95-128)||(42485251-42485284)
[»] chr8 (1 HSPs)
chr8 (90-128)||(35287734-35287772)
[»] chr3 (2 HSPs)
chr3 (90-128)||(44069776-44069814)
chr3 (90-126)||(47454637-47454673)
[»] chr7 (2 HSPs)
chr7 (83-121)||(31481069-31481107)
chr7 (92-128)||(18847444-18847480)
[»] chr6 (1 HSPs)
chr6 (90-128)||(20863393-20863431)
[»] chr5 (1 HSPs)
chr5 (90-126)||(9903867-9903903)
[»] chr4 (1 HSPs)
chr4 (81-125)||(25414225-25414269)
[»] chr2 (1 HSPs)
chr2 (81-121)||(40591201-40591241)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 36608166 - 36607710
Alignment:
Q  1 caaaatcaaacaattgaaatatcttcttttctaagaaaccaaattagtccaccgaatttgagacaagagagaattgagtttgagactttaggaggagcac 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  36608166 caaaatcaaacaattgaaatatcttcttttctaagaaatcaaattagtccaccgaacttgagacaagagagaatcgagtttgagactttaggagcagcac 36608067  T
Q  101 actccaaaatctcaagccaacaccaccatattaaccctaattggttaacaattgcaatatctaagagacaagtttaattaagtcaaccattttaataact 200  Q
    |||||||| ||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36608066 actccaaagtctcaagccaacaccaccatattgatccaaattagttaacaattgcaatatctaagagacaagtttaattaagtcaaccattttaataact 36607967  T
Q  201 tcacctacaaactttacgaactatgtaactggatcaattttattaaaccaatatctttcaaatagtaatgattataaaatgttcacccaaacacagagtt 300  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36607966 tcacctacaaactttactaactatgtaactggatcaattttattaaaccaatatctttcaaatagtaatgattataaaatgttcacccaaacacagagtt 36607867  T
Q  301 caagttaatgcttgtgtttgcagacttggtgttaaaaactagtactcttgtctggtatcgcaagagccaaaagaagacaaacctaatatgcacaaaactt 400  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36607866 caagttaatgcttgtttttgcagacttggtgttaaaaactggtactcttgtctggtatcgcaagagccaaaagaagacaaacctaatatgcacaaaactt 36607767  T
Q  401 ttacgaaactaataaaatgttaaatatgtactnnnnnnntgtataaaatgtataagt 457  Q
    ||||||||||| ||||||||||||||||||||       ||||||||||||||||||    
T  36607766 ttacgaaactattaaaatgttaaatatgtactaaaaaaatgtataaaatgtataagt 36607710  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 42485251 - 42485284
Alignment:
Q  95 gagcacactccaaaatctcaagccaacaccacca 128  Q
    |||||||||||||| |||||||||||||||||||    
T  42485251 gagcacactccaaactctcaagccaacaccacca 42485284  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 35287772 - 35287734
Alignment:
Q  90 aggaggagcacactccaaaatctcaagccaacaccacca 128  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35287772 aggaggagcacactccaaaatctcaagccaacaccacca 35287734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 44069814 - 44069776
Alignment:
Q  90 aggaggagcacactccaaaatctcaagccaacaccacca 128  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  44069814 aggaggagcacactccaagatctcaagccaacaccacca 44069776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 47454637 - 47454673
Alignment:
Q  90 aggaggagcacactccaaaatctcaagccaacaccac 126  Q
    |||||||||||||||||| |||||||||||| |||||    
T  47454637 aggaggagcacactccaagatctcaagccaataccac 47454673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 31481107 - 31481069
Alignment:
Q  83 agactttaggaggagcacactccaaaatctcaagccaac 121  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  31481107 agactttaagaggagcacactccaaaatctcaagtcaac 31481069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 18847444 - 18847480
Alignment:
Q  92 gaggagcacactccaaaatctcaagccaacaccacca 128  Q
    ||||||||||||| || ||||||||||||||||||||    
T  18847444 gaggagcacactcgaagatctcaagccaacaccacca 18847480  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 20863431 - 20863393
Alignment:
Q  90 aggaggagcacactccaaaatctcaagccaacaccacca 128  Q
    ||||||||||||||||||| || ||||||||||||||||    
T  20863431 aggaggagcacactccaaagtcccaagccaacaccacca 20863393  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 9903903 - 9903867
Alignment:
Q  90 aggaggagcacactccaaaatctcaagccaacaccac 126  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  9903903 aggaggatcacactccaatatctcaagccaacaccac 9903867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 25414225 - 25414269
Alignment:
Q  81 tgagactttaggaggagcacactccaaaatctcaagccaacacca 125  Q
    |||||||||  ||||||||||||||||  ||||||||||||||||    
T  25414225 tgagactttgagaggagcacactccaaggtctcaagccaacacca 25414269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 40591241 - 40591201
Alignment:
Q  81 tgagactttaggaggagcacactccaaaatctcaagccaac 121  Q
    |||||||||  |||||||||||||||| |||||||||||||    
T  40591241 tgagactttgagaggagcacactccaagatctcaagccaac 40591201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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