View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_13 (Length: 437)
Name: NF13835_low_13
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 417
Target Start/End: Complemental strand, 23554358 - 23553975
Alignment:
| Q |
19 |
gttatacacacacactaatcaaagatagaaatcgaaacgtgaacgaatggttgagagacccaagtatatttacctaactatctttaaattatagaattta |
118 |
Q |
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| T |
23554358 |
gttatacacacgcactaatcaaagatagaaatagaaacgtgaacgaatggttgagagacccaagtatatttagccaactatctttaaattatagaattta |
23554259 |
T |
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| Q |
119 |
tcatgttaatcatcataaatagtattatatttgccgttaggaaaaaacacagccttacattagtataaggcattatcactgattcacacaatcttatata |
218 |
Q |
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| T |
23554258 |
tcatgttaatcatcataaata---ttatatttgccattaggaaaaaacacagccttacattagtttaaggcattatcactgattcacacaatcttatata |
23554162 |
T |
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| Q |
219 |
tcatcctttatttctaggttccagtatgttcgttatgattattagccacattagata--atgctcctttagaagaactacaaagaaatatcacaaacagc |
316 |
Q |
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| T |
23554161 |
tcatcctttatttctaggttccagtatgttcgttatgattattagccacattagataatatgctcctttagaagaactacaaagaaatatcacaaacaac |
23554062 |
T |
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| Q |
317 |
ttgtattatagttttgataagctcaacattataatcactttcactggcatactttcaccaacaacttggtgattgtcacaagaagttgtattagtaaaat |
416 |
Q |
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| T |
23554061 |
ttgtattatagttttgataagctcaacattataatc--------------actttcaccaacaacttggtgattatcacaagaagttgtattagtaaaat |
23553976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 262
Target Start/End: Complemental strand, 23306914 - 23306820
Alignment:
| Q |
170 |
gccttacattagtataaggcattatcactgattcacacaatct--tatatatcatcctttatttctaggttccagtatgttcgttatgattatta |
262 |
Q |
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| T |
23306914 |
gccttacattagtttaaggcattgacactgattcacacactcttatatatattagcctttatttctaggtttcattatgttcgttatgatcatta |
23306820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 398
Target Start/End: Complemental strand, 23306760 - 23306720
Alignment:
| Q |
358 |
cactggcatactttcaccaacaacttggtgattgtcacaag |
398 |
Q |
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| T |
23306760 |
cactagcatactttcaccaacaccttgatgattgtcacaag |
23306720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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