View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_17 (Length: 360)
Name: NF13835_low_17
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 12833298 - 12833632
Alignment:
| Q |
2 |
taccattaccaccgacacaatcggtgtctcttcatgcatatggtcgttgnnnnnnnntatgagtgaaaatggttgatggttcactttcatataaaatcgc |
101 |
Q |
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| T |
12833298 |
taccattaccaccgacacaatcggtgtctcttcatgcatatagtcgttgaaaaaaaatatgagtgaaaatggttgatggttcactttcatataaaatcgc |
12833397 |
T |
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| Q |
102 |
accaaatccataaatcaagaacattgtgttggcaattatattcaaaaactcatttgaatcattttggatataaaactcacatcaccttaaaagtacgtgt |
201 |
Q |
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| T |
12833398 |
accaaatccataaatcaagaacattgtgttggcaattatattcaaaaactcatttgagtcattttggatataaaactcacatcaccttaaaagtatgtgt |
12833497 |
T |
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| Q |
202 |
tttctctgaaattttgaacaatcgaaaccttctattcagatattcatctttgtcaaattaacgtaataaactaattctttttcccattgaataaagtgaa |
301 |
Q |
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| T |
12833498 |
tttctctgaaattttgaacaatcgaaaccttctattcagatattcatctttgtcaaattaaagtaataaactaattctttttcccattgaataaagtgaa |
12833597 |
T |
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| Q |
302 |
taccaacaaaaacaaaaactgtattgttacataca |
336 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
12833598 |
taccaacaaaaacaaaaactgtattgttacataca |
12833632 |
T |
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