View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_18 (Length: 356)
Name: NF13835_low_18
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 49840889 - 49840557
Alignment:
| Q |
18 |
tcaggtgattcggtaagagaatgatgaagcccatcagtaagactcttgctaccatgaccacagtcatttgctattttcctctctaattcactaatctcag |
117 |
Q |
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| T |
49840889 |
tcaggtgattcggtaagagaatgatgaagcccatcagtaagactcttgctaccatgaccacagtcatttgctattttcctctctaattcactaatctcag |
49840790 |
T |
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| Q |
118 |
attgaagttgcgaatgcttaaaatcgcggttcaacagaaactgattttccttcttttcaagatcctgaactaaaagtggatatcgtaagcaacacattat |
217 |
Q |
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| T |
49840789 |
attgaagttgcgaatgcttaaaatcgcggttcaacagaaactgattttccttcttttcaagatcctgaactaaaagtggatatcgtaagcaacacattat |
49840690 |
T |
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| Q |
218 |
actcaattttaaatttaatgcgattaatagctaacaaaaaattgataattcaccttcaaagacttgattgaagtgtacaacttgtgcatagcagaatcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49840689 |
actcaattttaaatttaatgcgattaatagctaacaaaaaattgataattcaccttcaaagacttgattgaagtgtacaacttgtgcacagcagaatcaa |
49840590 |
T |
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| Q |
318 |
caccttccttattaattcttgctcttaattcat |
350 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
49840589 |
caccttccttattgattcttgctcttaattcat |
49840557 |
T |
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