View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_19 (Length: 348)
Name: NF13835_low_19
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 4 - 333
Target Start/End: Original strand, 51052403 - 51052732
Alignment:
| Q |
4 |
ccaactataaatacatgagggagttgaattgaactactaaccatagaaacttctggtttttgcggactgcttgcaatttttggtctgaaagcatttggan |
103 |
Q |
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| T |
51052403 |
ccaactataaatacatgagggagttgaattgaactactaaccatagaaacttctggtttttgcggactgcttgcaatttttggtctgaaagcatttggat |
51052502 |
T |
|
| Q |
104 |
nnnnnnccagtgtcattccaattgcctcctttcgggcagcctcattgttcagattattatgacaattttgacagttgcaaccatcacaatagatcccagc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51052503 |
ttttttccagtgtcattccaattgcctcctttcgggcagcctcattgttcagattattatgacaattttgacagttgcaaccatcacaatagatcccagc |
51052602 |
T |
|
| Q |
204 |
tgcatagcactcacagtaccttgcagttgcaaaatcagctattgttataaagaaagtgcatggtcatgtgatgaaatacccttgatgaaagtttttcata |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51052603 |
tgcatagcactcacagtaccttgcagttgcaaaatcagctattgttataaagaaagtgcatggtcatgtgatgaaatacccttgatgaaagtttttcata |
51052702 |
T |
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| Q |
304 |
cagagaagctaaagtacttacagtttaagg |
333 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
51052703 |
cagagaagctaaagtacttacagtttaagg |
51052732 |
T |
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