View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_20 (Length: 336)
Name: NF13835_low_20
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_20 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 48279903 - 48279585
Alignment:
| Q |
7 |
gacatgactacaattgatatgaagaatgaccctataaaatatttacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgcc |
106 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| || || |
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| T |
48279903 |
gacatgactacaattgatatgaaggatgacccaataaaatatttactgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctacc |
48279804 |
T |
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| Q |
107 |
atggacataatagtcaaataagaatagatnnnnnnnntgtaacctgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaag |
206 |
Q |
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| T |
48279803 |
ctggacataatagccaaataagaatagataaaaaaa-tataacccgaacaaaaagacctacatcttattgagagaagagcagtatctaccttttctgaag |
48279705 |
T |
|
| Q |
207 |
agaagaaagaacatgaaagttttcttagtacccgcatctgccataccgcaccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccc |
306 |
Q |
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| T |
48279704 |
agaagaaagaacatgaaagttttcttagtaaccgcatctgccgtaccgcgccatcaacatagcatgaccaccgccatctcctagttaaaaacttagcccc |
48279605 |
T |
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| Q |
307 |
cacgcaccgactgctctgtg |
326 |
Q |
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||||||||||||||| |||| |
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| T |
48279604 |
cacgcaccgactgctttgtg |
48279585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 40389747 - 40389430
Alignment:
| Q |
7 |
gacatgactacaattgatatgaagaatgaccctataaaatatttacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgcc |
106 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||| || || |
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| T |
40389747 |
gacatgactacaattgatatgaaggatgacccaataaaatatttattgctccatgtgattccaatatcttgacctcatcaagaatggtgtgtctgctacc |
40389648 |
T |
|
| Q |
107 |
atggacataatagtcaaataagaatagatnnnnnnnntgtaacctgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaag |
206 |
Q |
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| T |
40389647 |
atggacataatagccatataagaatagataaaaaaa-tgtaacccggacaaaaagacttatatcttattgagagaagagcagtatctaccttttctgaag |
40389549 |
T |
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| Q |
207 |
agaagaaagaacatgaaagttttcttagtacccgcatctgccataccgcaccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccc |
306 |
Q |
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|||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
40389548 |
agaagaaagaacatgaaagttttcttagtaaccgcatctaccgtaccgcgccatcaacatagcatgaccaccgccatcttctagttaaaaacttag-ccc |
40389450 |
T |
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| Q |
307 |
cacgcaccgactgctctgtg |
326 |
Q |
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| T |
40389449 |
cacgcaccgactgctttgtg |
40389430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 29633807 - 29633499
Alignment:
| Q |
7 |
gacatgactacaattgatatgaagaatgaccctataaaatatttacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgcc |
106 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||| || ||||||||||||||||||||||||||||||||||||||| || ||| || || |
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| T |
29633807 |
gacatgactacaattgatatgaaggatgacccaata---------ctgctccatgtgattccaatatcttgacctcatcaagaatgg-gtgtctgctacc |
29633718 |
T |
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| Q |
107 |
atggacataatagtcaaataagaatagatnnnnnnnntgtaacctgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaag |
206 |
Q |
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|| ||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||| | |||||||||||| |
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| T |
29633717 |
atagacgtaatagccaaataagaatagataaaaaaa-tgtaacccgaacaaaaagacttacatcttattgagagaagaacaatatctgccttttctgaag |
29633619 |
T |
|
| Q |
207 |
agaagaaagaacatgaaagttttcttagtacccgcatctgccataccgcaccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccc |
306 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
29633618 |
agaagaaagaacatgaaagttttcttagtaaccgcatatgccgtaccgcgccatcaacatagcaggaccaccgccatctcctagttaaaaacttagcccc |
29633519 |
T |
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| Q |
307 |
cacgcaccgactgctctgtg |
326 |
Q |
| |
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|| |||||||||||| |||| |
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| T |
29633518 |
catgcaccgactgctttgtg |
29633499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 326
Target Start/End: Complemental strand, 83507 - 83189
Alignment:
| Q |
7 |
gacatgactacaattgatatgaagaatgaccctataaaatatttacttctccatgtgattccaatatcttgacctcatcaagaatggtgtatctactgcc |
106 |
Q |
| |
|
||||||||||||||| |||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||| || || |
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| T |
83507 |
gacatgactacaattaatatgaaggatgaccgaataaaatatttactgctccatgtgattccaatatcttgacctcatcatgaatggtgtgtctgctacc |
83408 |
T |
|
| Q |
107 |
atggacataatagtcaaataagaatagatnnnnnnnntgtaacctgaacaaaaagacttacatcttattgagagaagagcagtatttaccttttctgaag |
206 |
Q |
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||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| || ||| |||||||||||||| |
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| T |
83407 |
atggacataatagccaaataagaataga-gaaaaaaatgtaacccgaacaaaaatacttacatcttattgagagaagaacaatatctaccttttctgaag |
83309 |
T |
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| Q |
207 |
agaagaaagaacatgaaagttttcttagtacccgcatctgccataccgcaccatcaacatagcatgaccaccgccatctgctagttaaaaacttagcccc |
306 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| || |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
83308 |
agaagaaagaacataaaagttttcttagtaaccgcatcttccgtaccacgccatcaacatagcatgaccaccgccatctcctagttaaaaacttagcccc |
83209 |
T |
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| Q |
307 |
cacgcaccgactgctctgtg |
326 |
Q |
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|||||| |||||||| |||| |
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| T |
83208 |
cacgcatcgactgctttgtg |
83189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 24564794 - 24564854
Alignment:
| Q |
174 |
ttgagagaagagcagtatttaccttttctgaa---gagaagaaagaacatgaaagttttct |
231 |
Q |
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|||||||||||||| ||| ||||||| ||||| |||||||||||||||||||||||||| |
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| T |
24564794 |
ttgagagaagagcactatatacctttcctgaaatggagaagaaagaacatgaaagttttct |
24564854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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