View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_25 (Length: 278)
Name: NF13835_low_25
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 15234398 - 15234145
Alignment:
| Q |
18 |
tattttcatggccgcgttttcatgttcgaatcaacattctcgaagaagtaccatgaccatttgaaaacctttgcatcacaagcaaatgtgataattgttt |
117 |
Q |
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| T |
15234398 |
tattttcatggcggcgttttcatgttcgaatcaacattctcgaagaagtaccatgaacatttgaaaacctttgcatcacaagcaaatgtgataattgttt |
15234299 |
T |
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| Q |
118 |
ccattgaatatagtcttgctcctgagtatcctctccctacatgttaccatgattgttgggctgcactcaaatggatatcttctcattccaataatgacat |
217 |
Q |
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| T |
15234298 |
ccattgaatatagtcttgctcctgagtatcctctccctacatgttaccatgattgttgggctgcactcaaatggatatcttctcattccaataataacat |
15234199 |
T |
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| Q |
218 |
caacaatccagaaccatggttgattgaacatggtaattttaataaactcttcat |
271 |
Q |
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| T |
15234198 |
caacaatccagaaccatggttgatcgaacatggtaattttaataaacttttcat |
15234145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 17473125 - 17473378
Alignment:
| Q |
18 |
tattttcatggccgcgttttcatgttcgaatcaacattctcgaagaagtaccatgaccatttgaaaacctttgcatcacaagcaaatgtgataattgttt |
117 |
Q |
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| T |
17473125 |
tattttcatggcggcgctttcatcttcgaatccgcattctcaaagttgtaccatgaccatttgaaaatctttgcatcacaagcaaatgtgattgttgttt |
17473224 |
T |
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| Q |
118 |
ccattgaatatagtcttgctcctgagtatcctctccctacatgttaccatgattgttgggctgcactcaaatggatatcttctcattccaat------aa |
211 |
Q |
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| T |
17473225 |
caattgaatatagacttgctcctgagtatcctctccctacatgttaccatgattgttgggctgcactcaaatgggtatcttctcattccaatcataccaa |
17473324 |
T |
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| Q |
212 |
tga---catcaacaatccagaaccatggttgattgaacatggtaattttaataa |
262 |
Q |
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||| |||||||||| |||||||||||||||||||||||||| ||||| |||| |
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| T |
17473325 |
tgataccatcaacaatgcagaaccatggttgattgaacatggtgattttgataa |
17473378 |
T |
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