View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_3 (Length: 804)
Name: NF13835_low_3
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 200 - 732
Target Start/End: Original strand, 56316958 - 56317493
Alignment:
| Q |
200 |
aaatttggaaaatgtatcaagtgaaaatcaagcgaatacatttcaagatggaattacatacacaagaatattttcttaatgtttctcataacctcttgaa |
299 |
Q |
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| T |
56316958 |
aaatttggaaaatgtatcaagtgaaaatcaagcgaagacatttcaagatggaattacatacacaagaatattttcttaatgtttctcataacctcttgaa |
56317057 |
T |
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| Q |
300 |
gtttaaaagggaccctaatatggacctcataaaataatcgaaatgcatgtggacttgctaatgctagggtataaaaaatattgaagtcatacactctcgg |
399 |
Q |
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| T |
56317058 |
gtttaaaagaaaccctaatatggacctcataaaataatcgaaatgcatgtggacttgctaatgctagggtataaaaaatattgaagtcatacactctcgg |
56317157 |
T |
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| Q |
400 |
ccaatatcttaggtgcttatggctgaaactaggtaaatattttagtaattttaaagataaaactaggtaagttacttcaaatctgcacctaaagtagaca |
499 |
Q |
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| T |
56317158 |
ccaatatcttaggtgcttatggctgaaactaggtaaatattttagtaattttaaagataaaactaggtaagttacttcaaatctgcacctaaagtagaca |
56317257 |
T |
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| Q |
500 |
ctaacattgtgtgattcaccaatggtttcataccaagcaaaataacttagcacacttgaaaattaagtttttgcgtagccagacgaaattgttcaatatt |
599 |
Q |
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| T |
56317258 |
ttaacattgtgtgattcaccaatggtttaataccaagcaaaataacttagaacacttgaaaattaggtttttgcgtagacagacaaaattgttcaatatt |
56317357 |
T |
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| Q |
600 |
tgtagtatctaaatttatatttctaaaggcatggcctctttcaatggaagctacttttggacaaaa---tatttcttaatggtgaatgtatttttgtatg |
696 |
Q |
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| T |
56317358 |
cgtagtatctaaatttagatttctaaaggcatggcctctttcaatggaggctacttttggacaaaatattatttcttaatggtgaatgtatttttgtatg |
56317457 |
T |
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| Q |
697 |
aaggtttatgcagactaggctcttgtgttgtttatg |
732 |
Q |
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| T |
56317458 |
aaggtttatgcagactaggctcttgtgttgtttatg |
56317493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 56316725 - 56316922
Alignment:
| Q |
1 |
tcatcataagtaaaattaaattgaaatgcaaacaaaataagattacatttacattttttctaaggcaagattacatttacatataannnnnnnnnnnnnn |
100 |
Q |
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| T |
56316725 |
tcatcataattaaaatgaaattgaaatgcaaacaaaataagattacatttacattttttctatggcaagattacatttacatataatgtttttctttttt |
56316824 |
T |
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| Q |
101 |
ngactaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcctc |
198 |
Q |
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| T |
56316825 |
tgacaaaatttacatataatgttatattcacggggaaataatccattaatccatatgcatatgagaaataagtcactaataaagaagatcgcagcctc |
56316922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 729 - 788
Target Start/End: Original strand, 56317505 - 56317564
Alignment:
| Q |
729 |
tatgctcttgtttgatgtatggaatgataccnnnnnnnnatacctattaaatcactagtt |
788 |
Q |
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| T |
56317505 |
tatgctcttgtttgatgtatggaatgataccttatttttatacctattaaatcactagtt |
56317564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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