View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13835_low_30 (Length: 255)
Name: NF13835_low_30
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13835_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 29030957 - 29030714
Alignment:
| Q |
12 |
gaagacctacaaaattattacagattgcaatttaaaatcacgcgcgaaatcatcaaggtataagaatgaagccgactcgtcctttaacatgcaaaaaacc |
111 |
Q |
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| T |
29030957 |
gaagacctacaaaattaatacagattgcaatttaaaatcacgcgcgaaatcatcaaggtataagaatgtagccgactcgtcctttaacatacaaaagagc |
29030858 |
T |
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| Q |
112 |
atcatatacagattaatctataaaccaataacattactcatacaatctaaacacaaaaccctctacaagc--nnnnnnnttcacaattcaaattctacaa |
209 |
Q |
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| T |
29030857 |
atcatatacagatcaatctataaaccaataacattactcatacaatcaaaacacaaaaccctcttcaagcaaaaaaaaattcacaattcaaattctacta |
29030758 |
T |
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| Q |
210 |
gggcaactcagcaaaacatcaacataaatatgaactctccaaac |
253 |
Q |
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| T |
29030757 |
gggcaacccagcaaaacttcaacatagatatgaactctccaaac |
29030714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 29031295 - 29031233
Alignment:
| Q |
12 |
gaagacctacaaaattattacagattgcaatttaaaatcacgcgcgaaatcatcaaggtataa |
74 |
Q |
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| T |
29031295 |
gaagacctaaaaaattattacagattgccatttaaaatcacgcgcgaaatcatcaaggtataa |
29031233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 29031033 - 29030990
Alignment:
| Q |
31 |
acagattgcaatttaaaatcacgcgcgaaatcatcaaggtataa |
74 |
Q |
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| T |
29031033 |
acagattgcaatttaaaatcacgcgcgaaatcatcaaggtataa |
29030990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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