View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13835_low_34 (Length: 216)

Name: NF13835_low_34
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13835_low_34
NF13835_low_34
[»] chr4 (1 HSPs)
chr4 (32-193)||(20297560-20297721)
[»] chr5 (15 HSPs)
chr5 (17-201)||(29871163-29871347)
chr5 (17-197)||(30059338-30059518)
chr5 (26-197)||(30434803-30434974)
chr5 (32-197)||(30748624-30748789)
chr5 (32-196)||(4380640-4380804)
chr5 (32-197)||(30243329-30243494)
chr5 (32-197)||(30339482-30339647)
chr5 (28-197)||(30482385-30482554)
chr5 (32-197)||(30399046-30399211)
chr5 (28-197)||(29852280-29852449)
chr5 (32-197)||(30678125-30678293)
chr5 (28-143)||(30714387-30714502)
chr5 (32-201)||(30205487-30205656)
chr5 (48-198)||(30203130-30203280)
chr5 (32-92)||(29709866-29709926)
[»] chr7 (1 HSPs)
chr7 (18-196)||(26706314-26706492)
[»] chr1 (2 HSPs)
chr1 (27-143)||(7582680-7582796)
chr1 (48-137)||(7098456-7098545)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 32 - 193
Target Start/End: Original strand, 20297560 - 20297721
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtctt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||   | ||||||||||||||| | |||||||||    
T  20297560 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaagttgaaaatctccaaatgccctaaacttggaatgccatgtctt 20297659  T
Q  132 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctac 193  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||    
T  20297660 ccatctcttaaatccctcgatgtcgatccatgtaacaatgagttactgagatcaatctctac 20297721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 29871347 - 29871163
Alignment:
Q  17 attatataagttacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaactt 116  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |   | ||||||||| ||    
T  29871347 attatataagttaccaaacatagagggtttattgaaagttgaaagaggggagatgtttccttgtctttctagtttggatatttggaaatgccctaaaatt 29871248  T
Q  117 ggactaccatgtcttccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttctgtg 201  Q
    ||||| |||||||||||||||||||||  ||||| || | ||||||||||||||||||||||| |||||||||||||||| ||||    
T  29871247 ggactgccatgtcttccatctcttaaagacctcgttgccgatccatgtaacaatgagttactgaggtcaatctctaccttttgtg 29871163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 30059518 - 30059338
Alignment:
Q  17 attatataagttacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaactt 116  Q
    ||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||| |||||||    
T  30059518 attatatcagttaccaaacatagagggtttattgaaagtggaaagaggggagatgtttccttgtctttctaagttggatatctctgaatgccgtaaactt 30059419  T
Q  117 ggactaccatgtcttccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    ||||| |||||||||||||||||||||||||||  |||      ||||||||||||||||||| |||||||||||||||||    
T  30059418 ggactgccatgtcttccatctcttaaatccctcactgtatcggaatgtaacaatgagttactgaggtcaatctctaccttc 30059338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 30434974 - 30434803
Alignment:
Q  26 gttacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactacca 125  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||   | ||||||||||||||||| |||    
T  30434974 gttaccaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgcca 30434875  T
Q  126 tgtcttccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    ||||||||||||||||||  ||||| |||| ||  | ||||||||||||||||| |||||||||||||||||    
T  30434874 tgtcttccatctcttaaagacctcggtgtcgatggacgtaacaatgagttactgaggtcaatctctaccttc 30434803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 30748789 - 30748624
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtctt 131  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||  ||||||||| |||||||||| |||||||||    
T  30748789 aaacatagagggattattgaaagtggaaagaggggagatgtttccttgtctttctaagttggatatctgggattgccctgaacttggactgccatgtctt 30748690  T
Q  132 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    |||||||||||||||||| || |      ||||||||||||||||||| |||||||||||||||||    
T  30748689 ccatctcttaaatccctccatttatgggaatgtaacaatgagttactgaggtcaatctctaccttc 30748624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 32 - 196
Target Start/End: Complemental strand, 4380804 - 4380640
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtctt 131  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||  ||||||||||||||||||| ||||||| |    
T  4380804 aaacataaaggggttattgaaagtggaaagaggggagttgtttccttgtctttctaacttggatatctagaattgccctaaacttggactgccatgtcat 4380705  T
Q  132 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctacctt 196  Q
    ||||||||||||  ||||| |||  |   ||||||||||||||||||| ||||||||||||||||    
T  4380704 ccatctcttaaacacctcgttgttgagggatgtaacaatgagttactgaggtcaatctctacctt 4380640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 30243329 - 30243494
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtctt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||   | ||||||||||||||||| |||||||||    
T  30243329 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctagtttggatatctggaaatgccctaaacttggactgccatgtctt 30243428  T
Q  132 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    ||||||||||||  ||||  |||      ||||||||||||||||||| |||||||||||||||||    
T  30243429 ccatctcttaaagacctctttgtatgggaatgtaacaatgagttactgaggtcaatctctaccttc 30243494  T

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Target: chr5; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 30339482 - 30339647
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtctt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||   ||||||||||| ||||||| |||||||||    
T  30339482 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaacttgacaatctcctattgccctaaaattggactgccatgtctt 30339581  T
Q  132 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    ||||||||||||  |||| ||||  |   ||||||||||||||||||| |||||||||||||||||    
T  30339582 ccatctcttaaagacctctatgttgagggatgtaacaatgagttactgaggtcaatctctaccttc 30339647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 30482554 - 30482385
Alignment:
Q  28 tacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||   |||||| |||||||||||| ||||     
T  30482554 tacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttcttacttggaaatctcatattgccataaacttggactgccatc 30482455  T
Q  128 tcttccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    ||||||||||||| ||  |||| ||||  ||  ||||||||||||||||||| |||||||||||||||||    
T  30482454 tcttccatctcttgaaggcctctatgtggatggatgtaacaatgagttactgaggtcaatctctaccttc 30482385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 32 - 197
Target Start/End: Complemental strand, 30399211 - 30399046
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtctt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||   |||   | |||||||||||||||| | |||||||||    
T  30399211 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctgagttgagaatcacagcttgccctaaacttggagtgccatgtctt 30399112  T
Q  132 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    |||||||||||||||||| ||||      ||||||||||||||||||| |||||||||||||||||    
T  30399111 ccatctcttaaatccctctatgtattgggatgtaacaatgagttactgaggtcaatctctaccttc 30399046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 29852449 - 29852280
Alignment:
Q  28 tacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatg 127  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | ||||   |||||||| |||||||||| |||||    
T  29852449 tacgaaacatagaggggttattgaaagtggaaagagggaagatatttccttgtctttctaatttgaaaatctcatattgccctgaacttggactgccatg 29852350  T
Q  128 tcttccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    |||||||||||| |||   ||| ||||      ||||||||||||||||||| |||||||||||||||||    
T  29852349 tcttccatctctgaaactgctccatgtattgggatgtaacaatgagttactgaggtcaatctctaccttc 29852280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 32 - 197
Target Start/End: Original strand, 30678125 - 30678293
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaa---cttggactaccatgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||   |||||||||||   |||||||| ||||||    
T  30678125 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaggttggatatctggaattgccctaaactgcttggactgccatgt 30678224  T
Q  129 cttccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttc 197  Q
    |||||||||||||||   |||||  |      ||||||||||||||||||| |||||||||||||||||    
T  30678225 cttccatctcttaaagaactcgagatatggggatgtaacaatgagttactgaggtcaatctctaccttc 30678293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 143
Target Start/End: Original strand, 30714387 - 30714502
Alignment:
Q  28 tacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatg 127  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||   ||| ||  |||||||||||||||||| |||||    
T  30714387 tacgaaacatagtggggttattgaaagtggaaagaggggagatgtttccttctctttctaaattggtaatcgattgttgccctaaacttggactgccatg 30714486  T
Q  128 tcttccatctcttaaa 143  Q
    ||||||||||||||||    
T  30714487 tcttccatctcttaaa 30714502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 30205656 - 30205487
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtctt 131  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||||||||  |||    ||||    |||||||||||||||||| |||||||||    
T  30205656 aaacttagaagggttattgaaagtggaaagaggtgagatgtttccttgtctttctcgtttaaccatctccttttgccctaaacttggactgccatgtctt 30205557  T
Q  132 ccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttctgtg 201  Q
      ||||||||||  ||| |||||      ||||||||||||||| ||| |||||||||||| ||| ||||    
T  30205556 gtatctcttaaaaacctagatgtattgggatgtaacaatgagttgctgaggtcaatctctagcttttgtg 30205487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 198
Target Start/End: Complemental strand, 30203280 - 30203130
Alignment:
Q  48 ttgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttccatctcttaaatccc 147  Q
    |||||||||||||||| |||||||||||||||||||| | | ||| |||||     || ||||||||||  |||  |||||||||||| | |||||  ||    
T  30203280 ttgaaagtggaaagagaggagatgtttccttgtctttttcaattggatatcgccttttaccctaaacttcaactgtcatgtcttccatatgttaaaaacc 30203181  T
Q  148 tcgatgtcaatccatgtaacaatgagttactgtggtcaatctctaccttct 198  Q
    |  |||| |||  ||||||||||||||||||| |||| ||||||| |||||    
T  30203180 tttatgtaaatgaatgtaacaatgagttactgaggtcgatctctagcttct 30203130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 29709866 - 29709926
Alignment:
Q  32 aaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttg 92  Q
    |||| ||||||||||| |||| |||||||||| |||| |||||||||||| ||||| ||||    
T  29709866 aaacttagaggggttagtgaatgtggaaagagaggaggtgtttccttgtccttctattttg 29709926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 26706492 - 26706314
Alignment:
Q  18 ttatataagttacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttg 117  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||||  ||||   || ||  |||||||||| || |    
T  26706492 ttatatgagttaccaaacatagaggggttattgaaagtggaaagaggaaaggtgtttccttgtctttctcgtttgacaatatactattgccctaagctag 26706393  T
Q  118 gactaccatgtcttccatctcttaaatccctcgatgtcaatccatgtaacaatgagttactgtggtcaatctctacctt 196  Q
    |||| ||||||||||||||||||||||||||| ||||      ||||||||||||||||||| |||||||| |||||||    
T  26706392 gactgccatgtcttccatctcttaaatccctcaatgtttcgggatgtaacaatgagttactgaggtcaatccctacctt 26706314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 7582680 - 7582796
Alignment:
Q  27 ttacgaaacatagaggggttattgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccat 126  Q
    |||| |||| |||||||||| ||||||||||||| |  ||||||||||||||||||||||| |||| | ||| |  ||||||||||||||| ||| || |    
T  7582680 ttaccaaacttagaggggttgttgaaagtggaaaaaaaggagatgtttccttgtctttctattttgaacatcaacaattgccctaaacttgaacttccgt 7582779  T
Q  127 gtcttccatctcttaaa 143  Q
    ||||||||||| |||||    
T  7582780 gtcttccatctgttaaa 7582796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 7098545 - 7098456
Alignment:
Q  48 ttgaaagtggaaagaggggagatgtttccttgtctttctaatttgtatatctatgattgccctaaacttggactaccatgtcttccatct 137  Q
    ||||||||||||||||  |||| ||||||||||||||||| |||| | ||| |  ||||||||||||||| ||| || ||||||||||||    
T  7098545 ttgaaagtggaaagagatgagacgtttccttgtctttctattttggaaatcgacaattgccctaaacttgaacttccgtgtcttccatct 7098456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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