View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13835_low_35 (Length: 206)

Name: NF13835_low_35
Description: NF13835
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13835_low_35
NF13835_low_35
[»] chr2 (2 HSPs)
chr2 (132-191)||(36092908-36092967)
chr2 (83-127)||(36089814-36089858)
[»] chr1 (3 HSPs)
chr1 (23-87)||(7904521-7904585)
chr1 (23-87)||(8003976-8004040)
chr1 (23-87)||(7901066-7901130)


Alignment Details
Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 36092908 - 36092967
Alignment:
Q  132 aactattacacacgcatagtcatattcatttttggtcctcccggtatccactcatattgc 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  36092908 aactattacacacgcatagtcatattcatttttggtcctcccggtatacattcatattgc 36092967  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 36089814 - 36089858
Alignment:
Q  83 aaaaacatcgaaaactcataacttgtaggagaatgacaattatca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  36089814 aaaaacatcgaaaactcataacttgtaggagaatgacaattatca 36089858  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 7904521 - 7904585
Alignment:
Q  23 aagtaaaaagtatacataaaagagacaaacatagatcaatcccaacaaattcaagtttcaaaaaa 87  Q
    |||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  7904521 aagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttcaaaaaa 7904585  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 8004040 - 8003976
Alignment:
Q  23 aagtaaaaagtatacataaaagagacaaacatagatcaatcccaacaaattcaagtttcaaaaaa 87  Q
    |||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||    
T  8004040 aagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttcaaaaaa 8003976  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 7901066 - 7901130
Alignment:
Q  23 aagtaaaaagtatacataaaagagacaaacatagatcaatcccaacaaattcaagtttcaaaaaa 87  Q
    |||||||| |||||||| ||||||| | | ||||||||||| |||||||| ||||||| ||||||    
T  7901066 aagtaaaatgtatacattaaagagatataaatagatcaatcacaacaaatccaagtttaaaaaaa 7901130  T

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