View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13836_high_10 (Length: 443)

Name: NF13836_high_10
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13836_high_10
NF13836_high_10
[»] chr8 (11 HSPs)
chr8 (24-261)||(12140778-12141013)
chr8 (266-375)||(12137841-12137951)
chr8 (280-375)||(12058394-12058489)
chr8 (274-361)||(12062434-12062521)
chr8 (261-347)||(15653376-15653462)
chr8 (261-361)||(15970581-15970680)
chr8 (261-347)||(15629534-15629620)
chr8 (274-347)||(12067199-12067272)
chr8 (274-347)||(15609513-15609586)
chr8 (280-375)||(12039863-12039959)
chr8 (311-363)||(14629606-14629658)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 24 - 261
Target Start/End: Complemental strand, 12141013 - 12140778
Alignment:
Q  24 aaatgtatagatatataatcatataagcactgtcaagacctttctagagtttaaaacaaaaacagtgaaataagtatatatgaaaataaatccactggca 123  Q
    |||||||||||||||  ||||||||||||||||  |||||||| || | |||||||||||||  |  |||||||  ||||| |||||||||||| |||||    
T  12141013 aaatgtatagatata--atcatataagcactgttgagacctttttaaaatttaaaacaaaaagtgcaaaataagagtatataaaaataaatccaatggca 12140916  T
Q  124 acaggatggtttatctcttacccgctgcatcagttcccaactcagtaaagacagcagcatccttcttgggcacagatttctcgtcttccttcacatcacc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12140915 acaggatggtttatctcttacccgctgcatcagttcccaactcagtaaagacagcagcatccttcttgggcacagattcctcgtcttccttcacatcacc 12140816  T
Q  224 actttcggctatgctggatgatttaaaatcatcatctg 261  Q
    |||||||| | |||||||||||||| ||||||||||||    
T  12140815 actttcggttgtgctggatgatttagaatcatcatctg 12140778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 375
Target Start/End: Complemental strand, 12137951 - 12137841
Alignment:
Q  266 ataatcttaa-ttcataaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaatttcaaaatcttgaatgg 364  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||  |||||| |||||||||||||||||||||||||||||    
T  12137951 ataatcttaaattcataaaatgaaataaactgaatcagcaaccatgtacaagataattacaggcatgatcaatatcaataaatttcaaaatcttgaatgg 12137852  T
Q  365 cgttactagaa 375  Q
    | |||||||||    
T  12137851 cattactagaa 12137841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 12058394 - 12058489
Alignment:
Q  280 taaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaatttcaaaatcttgaatggcgttactagaa 375  Q
    ||||||||||||||||||||||  || ||||||||||||||||  ||  | |||| |||| ||||| | ||||||||||||||| | |||||||||    
T  12058394 taaaatgaaataaactgaatcacaaaccatgtaaaagataattcaagccaagatcaatattaataattatcaaaatcttgaatgtcattactagaa 12058489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 12062434 - 12062521
Alignment:
Q  274 aattcataaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaatttcaaaatcttgaa 361  Q
    ||||||||||||||||||||||||||||| |  || ||||||||||||| || | |||||| ||||||| |||| || ||||| ||||    
T  12062434 aattcataaaatgaaataaactgaatcagaagccacgtaaaagataatttgaaacatgatcaatatcaacaaatatcgaaatcatgaa 12062521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 15653462 - 15653376
Alignment:
Q  261 gcggaataatcttaattcataaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaat 347  Q
    |||| ||||| | ||||||||||||||||||||| ||||||| |   ||||||||||||||| || | |||||| ||||||||||||    
T  15653462 gcggtataatttgaattcataaaatgaaataaaccgaatcagaagctatgtaaaagataatttgaaacatgatcaatatcaataaat 15653376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 361
Target Start/End: Original strand, 15970581 - 15970680
Alignment:
Q  261 gcggaataatcttaattcataaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaatttcaaaatcttga 360  Q
    |||| ||||| | ||||| |||||||||| |||| ||||||| |  |||||||||||||||| || | |||| | ||||||||||||||||||||| |||    
T  15970581 gcggtataatttgaattcgtaaaatgaaa-aaaccgaatcagaagccatgtaaaagataatttgaaacatgaacaatatcaataaatttcaaaatcatga 15970679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 15629620 - 15629534
Alignment:
Q  261 gcggaataatcttaattcataaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaat 347  Q
    |||| ||||| | |||| |||||||||||||||| ||||||| |   ||||||||||||||| || | |||||| ||||||||||||    
T  15629620 gcggtataatttgaatttataaaatgaaataaaccgaatcagaagctatgtaaaagataatttgaaacatgatcaatatcaataaat 15629534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 347
Target Start/End: Original strand, 12067199 - 12067272
Alignment:
Q  274 aattcataaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaat 347  Q
    ||||||||||| ||||||||| |||| |  || |||||||||||||||| || | |||||| ||||||||||||    
T  12067199 aattcataaaaagaaataaaccgaattattaaccatgtaaaagataatttgaaacatgatcaatatcaataaat 12067272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 15609586 - 15609513
Alignment:
Q  274 aattcataaaatgaaataaactgaatcagcaaacatgtaaaagataattagagaaatgatccatatcaataaat 347  Q
    ||||||||||||||||||||| ||||||| |   |||||||||||||||  | | |||||| ||||||||||||    
T  15609586 aattcataaaatgaaataaaccgaatcagaagctatgtaaaagataatttaaaacatgatcaatatcaataaat 15609513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 12039863 - 12039959
Alignment:
Q  280 taaaatgaaataaactgaatcagcaaaca-tgtaaaagataatta-gagaaatgatccatatcaataaatttcaaaatcttgaatggcgttactagaa 375  Q
    |||||||||||||||||||| | |||||| ||||| ||||||||  |||  | |||| |||| ||||||| ||||||||||||||| | |||||||||    
T  12039863 taaaatgaaataaactgaataa-caaacaatgtaagagataatttcgagccaagatcaatattaataaatatcaaaatcttgaatgtcattactagaa 12039959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 14629606 - 14629658
Alignment:
Q  311 taaaagataattagagaaatgatccatatcaataaatttcaaaatcttgaatg 363  Q
    |||||||||||  |||| |||||| |||||||||||| ||||||||| |||||    
T  14629606 taaaagataatgtgagacatgatcaatatcaataaatatcaaaatctagaatg 14629658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University