View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_high_13 (Length: 393)
Name: NF13836_high_13
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 11 - 376
Target Start/End: Original strand, 39389473 - 39389838
Alignment:
| Q |
11 |
cacagaagtggtttccacaatctcttttcaagaggaaattgtgttatccgatgattccaattcggaaagtgctgcgtcatcacatgatagcagaattgat |
110 |
Q |
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| T |
39389473 |
cacagaagtggtttccacaatctcttttcaagaggaaattgtgctatccgatgattccaattcggaaagtgctgcgtcatcacatgatagcagaattgat |
39389572 |
T |
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| Q |
111 |
gaagaatgtttggcttcattaggagcagaaaaagttgaagataatgtggtttcagatattgttgaagaaaaatattgttcatccgaaacaatactaaatg |
210 |
Q |
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| T |
39389573 |
gaagaatgtttggcatcattaggagcagaaaaagttgaagataatgtggtttcagatattgttgaagaaaaatattgttcatccgaaacaatactaaatg |
39389672 |
T |
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| Q |
211 |
gagcggaaattggtattcggaatgaagaacatgtagaagccgaaacagaaactgaagtcaccaatgatggtgtgaatgttgaacctgaaataaattctga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
39389673 |
gagcggaaattggtattcggaatgaagaacatgtagaagccgaaacagaaactgaagtcaccaatgatggtgtgaatgttaaacctgaaataacttctga |
39389772 |
T |
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| Q |
311 |
tgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaactgatatcggtatcagactcatt |
376 |
Q |
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| T |
39389773 |
tgaaaaaggaaaatcatccatggaggtgaatgatcaacatcaaccgatatcggtatcagactcatt |
39389838 |
T |
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