View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13836_high_15 (Length: 359)
Name: NF13836_high_15
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 17108766 - 17108419
Alignment:
| Q |
1 |
accagccgtgctgaaatgcatattttaatcccaagataaagttgtgcagttctgcctcaattaccgaactcgaacccaaattagaagcaaaacagcctaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
17108766 |
accagccgtgctgaaatgcatattttaatcccaagataaagttgtgcagttctgcctcaattaccgaactcgaccccaaattagcagcaaaacagcctaa |
17108667 |
T |
|
| Q |
101 |
aaatgaacctctacaatctcaaaaaatcccgccacaagcccccatattatcaatcaaagagtcatctgtattgaacttaatataaggaagagaaagcatc |
200 |
Q |
| |
|
||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
17108666 |
aaaagaacctctataatctcaaaaaatcccgccacaagcccccatattatcaaccaaagagtcatctgtattcaacttaatataaggaaaagaaagcatc |
17108567 |
T |
|
| Q |
201 |
ttccaaacaacagagatgacaacacatttatcgatcgttaagagagaccaagaaaacattcaaaagacaattatccgacgaattgggcaaacatttacct |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17108566 |
ttctaaacaacagagatgacaacacatttatcgatggttaagagagaccaagaaaacattcaaaagacagttatccgacgaattgggcaaacatttacct |
17108467 |
T |
|
| Q |
301 |
aaagaattattgtctgacaatgcgacataaataattatctttgccttt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17108466 |
gaagaattattgtctgacaatgcgacataagtaattatctttgccttt |
17108419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 43691884 - 43691730
Alignment:
| Q |
30 |
cccaagataaagttgtgcagttctgcctcaattaccgaactcgaacccaaattagaagcaaaacagcctaaaaatgaacctctacaatctcaaaaaatcc |
129 |
Q |
| |
|
||||| |||||||||| || |||||| ||||| |||||||| | | || ||||||||||||||| |||||||| |||||| | |||| || ||||| | |
|
|
| T |
43691884 |
cccaaaataaagttgttcaattctgcttcaataaccgaactaggcctcatattagaagcaaaacatcctaaaaaagaacctttgtaatcacagaaaatac |
43691785 |
T |
|
| Q |
130 |
cgccacaagcccccatattatcaatcaaagagtcatctgtattgaacttaatata |
184 |
Q |
| |
|
| ||| ||||||| | || ||||| ||||||| |||| | ||| | ||||||||| |
|
|
| T |
43691784 |
ctccataagccccaacatcatcaaccaaagagccatccgaattcatcttaatata |
43691730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University