View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13836_high_16 (Length: 336)
Name: NF13836_high_16
Description: NF13836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13836_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 325
Target Start/End: Original strand, 3949051 - 3949358
Alignment:
| Q |
18 |
aggaattgtgcaggttgttgtttcgccggagaaattgtgcttgagagatgcggatgaagatgagcttggtggatttgaagatatgacgaggttgacttac |
117 |
Q |
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| T |
3949051 |
aggaattgtgcaggttgttgtttcgccggagaaattgtgcttgagagatgcggatgaagatgagcttggtggatttgaagatatgacgaggttgacttac |
3949150 |
T |
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| Q |
118 |
ttgaatgaaccgggagttttgtataatattcggaggagatacgcacttaatgatatctatgtgagtatgtgttaatttgttttttagccaacacttgcac |
217 |
Q |
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| T |
3949151 |
ttgaatgaaccgggagttttgtataatattcggaggagatacgcacttaatgatatctatgtgagtatgtgttaatttgttttttagccaacacttgcac |
3949250 |
T |
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| Q |
218 |
caccgaaacttctgatagaaggcgtgtccggtgtttgatatggacggacatgtgtgaatacatttaattttatcatttttcgtaattttctcccggtgct |
317 |
Q |
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| T |
3949251 |
caccgaaacttctgatagaaggcgtgtccggtgtttgatatggacggacatgtgtgaatacatttaattttatcatttttcgtaattttctcccggtgct |
3949350 |
T |
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| Q |
318 |
gacgtgtc |
325 |
Q |
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| T |
3949351 |
gatgtgtc |
3949358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 48492333 - 48492460
Alignment:
| Q |
31 |
gttgttgtttcgccggagaaattgtgcttgagagatgcggatgaagatgagcttggtggatttgaagatatgacgaggttgacttacttgaatgaaccgg |
130 |
Q |
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| T |
48492333 |
gttgttgttgctccggagaaactgtttccgagagatgcggatgaagatgaacacggtggagttgaagatatgacgagattgatttatttgaatgaaccag |
48492432 |
T |
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| Q |
131 |
gagttttgtataatattcggaggagata |
158 |
Q |
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| T |
48492433 |
gggttttgtataatattcggagaagata |
48492460 |
T |
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